Locus 10279

Sequence ID 3R_DroMel_CAF1
Location 27,556,352 – 27,556,444
Length 92
Max. P 0.625213
window16372

overview

Window 2

Location 27,556,352 – 27,556,444
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -33.22
Consensus MFE -30.38
Energy contribution -30.52
Covariance contribution 0.14
Combinations/Pair 1.10
Mean z-score -1.29
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.625213
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27556352 92 + 27905053
CGUCCAGCGGAUCCCUGGGUCCGUUGACGACCUCC---GCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCUGGGCACCUCACACCAAGCC
((((.((((((((....))))))))))))......---((.((((.(((.......))))))).)).........(((..........))).... ( -33.80)
>DroPse_CAF1 89036 95 + 1
CGUCGAGCGGCUCUCUGGGGCCGCUGACGGUGGCCACGGCACCCACAGCACCCGCUGCUGCGGCGCAGUAAUCUCCCCUCGACCCACACCCAUAC
((((.((((((((....))))))))))))((((..((.((.((((((((....)))).)).)).)).))..((.......)).))))........ ( -37.50)
>DroSec_CAF1 74526 92 + 1
CGUCCAGCGGAUCCCUGGGUCCGUUGACGACCUCC---GCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCUGGGCACCUCACACCAAGCC
((((.((((((((....))))))))))))......---((.((((.(((.......))))))).)).........(((..........))).... ( -33.80)
>DroSim_CAF1 75640 92 + 1
CGUCCAGCGGAUCCCUGGGUCCGUUGACGACCUCC---GCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCUGGGCACCUCACACCAAGCC
((((.((((((((....))))))))))))......---((.((((.(((.......))))))).)).........(((..........))).... ( -33.80)
>DroEre_CAF1 78384 95 + 1
CGUCCAGCGGAUCCCUGGGUCCGAUGACGGCCUCCUCAGCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCCAGACACCUCACACCAAGCC
.(((...((((((....))))))..)))(((.......((.((((.(((.......))))))).))...........((....)).......))) ( -30.20)
>DroYak_CAF1 76712 95 + 1
CGUCCAGCGGAUCCCUGGGUCCGAUGACGGCCUCCUCAGCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCUAGACACCUCACACCAAGCC
.(((...((((((....))))))..)))(((.......((.((((.(((.......))))))).))...........((....)).......))) ( -30.20)
>consensus
CGUCCAGCGGAUCCCUGGGUCCGUUGACGACCUCC___GCACCGCCAGCACCAGCAGCUGCGGCGCAGUAAUCUCUGGGCACCUCACACCAAGCC
((((.((((((((....)))))))))))).........((.(((.((((.......))))))).))............................. (-30.38 = -30.52 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:10 2006