Locus 10278

Sequence ID 3R_DroMel_CAF1
Location 27,547,580 – 27,547,675
Length 95
Max. P 0.743032
window16371

overview

Window 1

Location 27,547,580 – 27,547,675
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 90.14
Mean single sequence MFE -38.53
Consensus MFE -32.73
Energy contribution -32.87
Covariance contribution 0.14
Combinations/Pair 1.11
Mean z-score -1.83
Structure conservation index 0.85
SVM decision value 0.45
SVM RNA-class probability 0.743032
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27547580 95 - 27905053
GGCCGGAUUCUGGUGUUCCGUCGACGCCAGCGGCGGAACAGGUAUCGCAGGUUGGCACCAAGCACAUGUGCCGACUGCCAGUUCCCCUAACCC-CU
((..(((..((((((((((((((.(....))))))))))..........(((((((((.........)))))))))))))).)))))......-.. ( -39.60)
>DroSec_CAF1 65770 95 - 1
GGCCGGAUUCUGGUGUUCCGACGACACCAGCGGCGGAACAGGUAUCGCAGGUUGGCACCAAACACAUGUGCCGACUGCCAGUUUCCCUAACGC-CU
(((.(((..(((((((((((.((.(....))).))))))..........(((((((((.........))))))))))))))..))).....))-). ( -38.70)
>DroSim_CAF1 64905 95 - 1
GGCCGGAUUCUGGUGUUCCGACGACGCCAGCGGCGGAACAGGUAUCGCAGGUUGGCACCAAACACAUGUGCCGACUGCCAGUUCCCCUAACCC-CU
.((((....((((((((.....))))))))))))(((((.(((......(((((((((.........)))))))))))).)))))........-.. ( -38.20)
>DroEre_CAF1 69365 95 - 1
GGCCGGAUUCUGGUGUUCCGUCGACGCCAACGGCGGAACAGGUAUCGCAGGUUGGCUCCAAACACAUGUGCCGACCGCCUGCUCCCCUCACCC-CU
.((((.....(((((((.....))))))).))))(((.(((((......(((((((..((......)).)))))))))))).)))........-.. ( -35.50)
>DroYak_CAF1 67689 96 - 1
GGCCGGAUUCUGGUGUUCCGUCGACGCCAACGGCGGAACAGGUAUCGCAGGUUGGCACCAAACACAUGUGCCGACCGCCUGUUCCCCUUGCCCCCC
(((.......(((((((.....)))))))..((.(((((((((......(((((((((.........))))))))))))))))))))..))).... ( -43.20)
>DroAna_CAF1 74327 94 - 1
GGCCGGAUUCUGGUGUUCCGUCGCCGUCAACAGCGGAACAGGUAUCGCAGGUUGGCACCAAACACAUGUGUCGGCCGCCUGCCUCCCCU-CCG-CU
(((((((.........))))..)))......((((((..(((((..((.(((((((((.........))))))))))).)))))....)-)))-)) ( -36.00)
>consensus
GGCCGGAUUCUGGUGUUCCGUCGACGCCAACGGCGGAACAGGUAUCGCAGGUUGGCACCAAACACAUGUGCCGACCGCCAGUUCCCCUAACCC_CU
(((..(((.((..((((((((((.......)))))))))))).)))...(((((((((.........))))))))))))................. (-32.73 = -32.87 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:09 2006