Locus 10277

Sequence ID 3R_DroMel_CAF1
Location 27,546,381 – 27,546,497
Length 116
Max. P 0.509890
window16370

overview

Window 0

Location 27,546,381 – 27,546,497
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 90.17
Mean single sequence MFE -23.43
Consensus MFE -18.85
Energy contribution -19.05
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.35
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.509890
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27546381 116 - 27905053
GACAUUUCGAAAAUACAUUUAUUUAGUUUAAUGUAUUUCUUUAAAACCUGAUUUUAGCCGGCAAUUUUGCAUUUUAUGGGUUGUCUUAAAAUUAGGUAAUUAAGAAAAGUUCCUCU
(((.((((((((.((((((..........))))))))))......((((((((((((..((((((((..........))))))))))))))))))))......)))).)))..... ( -24.90)
>DroSec_CAF1 64537 116 - 1
GACAUUUCGAAAAUACAUUUGUUUAGUUUAAUGUAUUUCUUUAAAACCUGAUUUUAGCCGGCGUUUUUGAAUUUUAUGGGUUGUCUUAAAAUCAGGUAAUUAAGAAAAGUUUCACU
........((((.((((((..........))))))((((((....((((((((((((.((((.(.............).))))..))))))))))))....))))))..))))... ( -23.72)
>DroSim_CAF1 63666 116 - 1
GACAUUUCGAAAAUACAUUUGUUUAGUUUAAUGUAUUUCUUUAAAACCUGAUUUUAGCCGGCGUUUUUGCAUUUUAUGGGUUGUCUUAAAAUCAGGUAAUUAAGAAAAGUUUCACU
........((((.((((((..........))))))((((((....((((((((((((..((((....(.(((...))).).))))))))))))))))....))))))..))))... ( -23.80)
>DroEre_CAF1 68038 115 - 1
G-UAUUUCGAAAAUACAUUUGUUUACUUUAAUGUAUUUCUUAAAAACCUGAUUUUGGCCGGCGGUUUUGCAUUUUAUUGGUUGUCUCAAAUUCAGGUGAUUAAGUAAAGAUCCUCC
.-........(((((((((..........)))))))))(((((..((((((.(((((.((((.(.............).)))).).)))).))))))..)))))............ ( -22.52)
>DroYak_CAF1 66399 115 - 1
GACAUUUCGAAAAUACAUUUGUUUACUUUAAUGUAUUUCUUGA-AACCUGAUUUUGGCCGGCGUUUUUGCAUUUUAUAGGUUGCCUUAAAUUAAGGUGAUUAAGUAAGGUUCCUCU
....(((((((((((((((..........))))))))).))))-)).........((((.(((....)))........(((..(((((...)))))..)))......))))..... ( -22.20)
>consensus
GACAUUUCGAAAAUACAUUUGUUUAGUUUAAUGUAUUUCUUUAAAACCUGAUUUUAGCCGGCGUUUUUGCAUUUUAUGGGUUGUCUUAAAAUCAGGUAAUUAAGAAAAGUUCCUCU
(((.((((((((.((((((..........))))))))))......((((((((((((..((((..................))))))))))))))))......)))).)))..... (-18.85 = -19.05 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:08 2006