| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,546,090 – 27,546,196 |
| Length | 106 |
| Max. P | 0.626832 |
| Location | 27,546,090 – 27,546,196 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27546090 106 - 27905053 AUGUCCCCAAAGAUAC-ACAACCACAUGUCUGUAACACAUCCGAUAUGUGGAUAUGUGUGUAUAUCCGUACUGGUUCCAAUCAU------AUAAGGCAAACAUUUGCGGAGGA ......((....((((-(((.(((((((((.(........).)))))))))...)))))))...((((((...(((((......------....))..)))...)))))))). ( -30.00) >DroPse_CAF1 77411 90 - 1 ACAUCCACACAGAUACUACUUCAACAUUU-----AUAGAUACAAGAUG------------UAUCUGUAUAGAGGUUCCGAUCAU------AUAUGGCAAACAUUUGCGGAGGA ...(((.....(((...(((((......(-----((((((((.....)------------))))))))..)))))....)))..------.....((((....)))))))... ( -21.60) >DroSec_CAF1 64255 98 - 1 AUGUCCCCAAAGAUAC-ACAACCACAUGUCUGUAACACAUCCGAUAUG--------UGUGUAUAUCCGCACUGGUUCCAAUCAU------AUAAGGCAAACAUUUGCGGAGGA ......((....((((-((....(((((((.(........).))))))--------))))))).((((((...(((((......------....))..)))...)))))))). ( -23.80) >DroSim_CAF1 63377 106 - 1 AUGUCCCCAAAGAUAC-ACAACCACAUGUCUGUAACACAUCGGAUAUGUGGACGUGUGUGUAUAUCCGUACUGGUUCCAAUCAU------AUAAGGCAAACAUUUGCGGAGGA ......((....((((-(((.(((((((((((........)))))))))))...)))))))...((((((...(((((......------....))..)))...)))))))). ( -35.00) >DroEre_CAF1 67748 104 - 1 AUGUCCCCAAAGAUAC-AUAACCACAUGUCUGUAACACAUCCGAUAUGUGGACG--UGUGUAUAUCUGUACUGGUUCCAAUCAU------AUAAGGCAAACAUUUGCGGAGGA ...(((((....((((-(((.(((((((((.(........).)))))))))...--)))))))...((((.((((....)))))------)))..((((....)))))).))) ( -27.60) >DroYak_CAF1 66107 110 - 1 GUGUCCCCAAAGAUAC-AUAACCACAUGUCUGUAACACAUCCGAUAUGUGGACG--UGUGUAUAUCUGUACUGCUUCCAAUCAUACUCGUAUAAGGCAAACAUUUGCGGAGGA .......((...((((-(((.(((((((((.(........).)))))))))...--)))))))...)).....(((((....(((....)))...((((....))))))))). ( -27.30) >consensus AUGUCCCCAAAGAUAC_ACAACCACAUGUCUGUAACACAUCCGAUAUGUGGACG__UGUGUAUAUCCGUACUGGUUCCAAUCAU______AUAAGGCAAACAUUUGCGGAGGA ...(((((...(((.......(((((((((.(........).)))))))))........((((....))))........))).............((((....)))))).))) (-15.40 = -16.82 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:07 2006