Locus 10275

Sequence ID 3R_DroMel_CAF1
Location 27,543,945 – 27,544,049
Length 104
Max. P 0.704222
window16368

overview

Window 8

Location 27,543,945 – 27,544,049
Length 104
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.39
Mean single sequence MFE -30.23
Consensus MFE -20.90
Energy contribution -22.04
Covariance contribution 1.14
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.69
SVM decision value 0.36
SVM RNA-class probability 0.704222
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27543945 104 + 27905053
GAAACGCACGAAGAGAAAGCAGCA----GACUGCGUGCUUUUUCUGGGCAUACCCCUUAGUGAACAUCCUAGAAAGGGGAUAUGGGCACACUAA-ACAGCUAUGUACGU
...(((.(((.((((((((((((.----....)).)))))))))).(((...((((((((.(.....))))...)))))...(((.....))).-...))).))).))) ( -29.80)
>DroSec_CAF1 62102 100 + 1
GAAACGCACGAGGAGAAAGCAGCA----CACUGCGUGCUUUUUCUGGGCAUACCCCUUAGUCAACAUCCUAGGAAGGGGAUAUGGGCACCCUAA-ACAGCG----ACGU
....(((....((((((((((((.----....)).))))))))))(((((((((((((((........)))...))))).))))....)))...-...)))----.... ( -32.60)
>DroSim_CAF1 61233 100 + 1
GAAACGCACGAGGAGAAAGCAGCA----CACUGCGUGCUUUUUCUGGGCAUACCCCUUAGUCAACAUCCUAGGAAGGGGAUAUGGGCACACUAA-ACAGCG----ACGU
....(((....((((((((((((.----....)).))))))))))...((((((((((((........)))...))))).))))..........-...)))----.... ( -29.90)
>DroEre_CAF1 65654 87 + 1
-------------AGAAAGCAGCA----CUCUGCGUGCUUUUUCUGGGCAUACCCCUUAGUCAGCAUCCUAGAAAGGGGAUAUGGGCACACUAG-CCAGCG----AAGU
-------------((((((.((((----(.....)))))))))))...((((((((((..((((....)).)))))))).))))(((......)-))....----.... ( -26.10)
>DroYak_CAF1 63950 100 + 1
GAAACGCACGAGGAGAAAGCAGCA----CACUGCGUGCUUUUUCUGGGCAUACCCCUUAGUCAGCAUCCUAGAAGGGGGAUAUGGGCACACUAG-CCAGCG----ACGU
....(((....((((((((((((.----....)).))))))))))...(((((((((...((((....)).)).))))).))))(((......)-)).)))----.... ( -34.30)
>DroAna_CAF1 70556 98 + 1
AAAACGCACGAGGAGAAAGCAGCACACACACUGCGUGCUUUUUCUUGGAAUACCCCUUGAUUGAAAUCGAGGAUAG--GAUAAGG-CAGUUUAAGGCAGUU--------
.((((((.(.((((((((((((((.......))).))))))))))).)....(((((((((....)))))))...)--).....)-).)))).........-------- ( -28.70)
>consensus
GAAACGCACGAGGAGAAAGCAGCA____CACUGCGUGCUUUUUCUGGGCAUACCCCUUAGUCAACAUCCUAGAAAGGGGAUAUGGGCACACUAA_ACAGCG____ACGU
.....((....(((((((((((((.......))).))))))))))...((((((((((...............)))))).))))..............))......... (-20.90 = -22.04 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:06 2006