Locus 10274

Sequence ID	3R_DroMel_CAF1
Location	27,535,784 – 27,535,878
Length	94
Max. P	0.995240

overview

Window 6

Location	27,535,784 – 27,535,878
Length	94
Sequences	6
Columns	94
Reading direction	forward
Mean pairwise identity	94.75
Mean single sequence MFE	-33.37
Consensus MFE	-31.31
Energy contribution	-31.37
Covariance contribution	0.06
Combinations/Pair	1.07
Mean z-score	-1.82
Structure conservation index	0.94
SVM decision value	2.56
SVM RNA-class probability	0.995240
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27535784 94 + 27905053
AAUGAUACCCUUUGACGAGGGUAUGGAAACUUUGUCGCUUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))(....).(..(((....((((((((((.......))))))))))((((....))))..)))..)...... ( -33.30)
>DroSec_CAF1 53844 94 + 1
AAUGAUACCCUUUGGCGAGGGUAUGGAAACUUUGUCGCUUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))(....).(..(((....((((((((((.......))))))))))((((....))))..)))..)...... ( -33.30)
>DroSim_CAF1 52944 94 + 1
AAUGAUACCCUUUGGCGAGGGUAUGGAAACUUUGUCGCUUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))(....).(..(((....((((((((((.......))))))))))((((....))))..)))..)...... ( -33.30)
>DroEre_CAF1 57101 94 + 1
AAUGAUACCCUUUGGCGAGGGUAUGGAAACUUUGUCGCUUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))(....).(..(((....((((((((((.......))))))))))((((....))))..)))..)...... ( -33.30)
>DroYak_CAF1 54919 94 + 1
AAUGAUACCCUUUGGCGAGGGUAUGCAAGCUUUGUCGCUUGGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))((..(((..(((((..(((((((((((.......))))))))))).......))))).....)))..)). ( -37.70)
>DroAna_CAF1 62387 94 + 1
AUAGCUACCCUUUUCAAAGAGUAUAGAAACUUUGUCGCCUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGCUGGUGGGCG
...(((...........(((((......)))))..((((..((((((((((.......))))))))))((((....))))......))))))). ( -29.30)
>consensus
AAUGAUACCCUUUGGCGAGGGUAUGGAAACUUUGUCGCUUUGUGGGCGGCAUCAAAGUUGCCGUUCACUUGCAAUUGCGAUCCGAUGGUGGGCG
....((((((((....))))))))...........(((((.((((((((((.......))))))))))((((....)))).........))))) (-31.31 = -31.37 +   0.06)

alignment

secondary structure

dotplot

Window 7

Location	27,535,784 – 27,535,878
Length	94
Sequences	6
Columns	94
Reading direction	reverse
Mean pairwise identity	94.75
Mean single sequence MFE	-25.35
Consensus MFE	-23.25
Energy contribution	-23.28
Covariance contribution	0.03
Combinations/Pair	1.05
Mean z-score	-1.71
Structure conservation index	0.92
SVM decision value	1.84
SVM RNA-class probability	0.979651
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27535784 94 - 27905053
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAAGCGACAAAGUUUCCAUACCCUCGUCAAAGGGUAUCAUU
...........(((.(....((((..(((..(((((.......)))))..)))...))))....)..)))(((((((......))))))).... ( -24.60)
>DroSec_CAF1 53844 94 - 1
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAAGCGACAAAGUUUCCAUACCCUCGCCAAAGGGUAUCAUU
...........(((.(....((((..(((..(((((.......)))))..)))...))))....)..)))(((((((......))))))).... ( -24.60)
>DroSim_CAF1 52944 94 - 1
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAAGCGACAAAGUUUCCAUACCCUCGCCAAAGGGUAUCAUU
...........(((.(....((((..(((..(((((.......)))))..)))...))))....)..)))(((((((......))))))).... ( -24.60)
>DroEre_CAF1 57101 94 - 1
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAAGCGACAAAGUUUCCAUACCCUCGCCAAAGGGUAUCAUU
...........(((.(....((((..(((..(((((.......)))))..)))...))))....)..)))(((((((......))))))).... ( -24.60)
>DroYak_CAF1 54919 94 - 1
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACCAAGCGACAAAGCUUGCAUACCCUCGCCAAAGGGUAUCAUU
...((......))...((....))..(((..(((((.......)))))..)))(((((......))))).(((((((......))))))).... ( -26.40)
>DroAna_CAF1 62387 94 - 1
CGCCCACCAGCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAGGCGACAAAGUUUCUAUACUCUUUGAAAAGGGUAGCUAU
.((((....((.(.((((........)))).).))(((((((.((((........)))).))))))).................))))...... ( -27.30)
>consensus
CGCCCACCAUCGGAUCGCAAUUGCAAGUGAACGGCAACUUUGAUGCCGCCCACAAAGCGACAAAGUUUCCAUACCCUCGCCAAAGGGUAUCAUU
(((((......))...((....))..(((..(((((.......)))))..)))...)))...........(((((((......))))))).... (-23.25 = -23.28 +   0.03)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:05 2006