Locus 10273

Sequence ID 3R_DroMel_CAF1
Location 27,531,797 – 27,531,909
Length 112
Max. P 0.524603
window16365

overview

Window 5

Location 27,531,797 – 27,531,909
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 90.02
Mean single sequence MFE -18.08
Consensus MFE -15.28
Energy contribution -15.28
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.85
SVM decision value -0.02
SVM RNA-class probability 0.524603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27531797 112 + 27905053
UUACCAUUUUCCCAUUUUCCUAUUUCCCCAUUUCCCCGCCCAUCGGGAGUUCCAAGCCAGCCAUUCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
..................................((((.....))))........(((.((...((((((...(((....)))))))))......)))))((......)).. ( -19.30)
>DroSec_CAF1 49776 100 + 1
UUCCCA--------UUUUCCUAUUUCCCCAUUUCCCCGCCCAUCGGGAGUUU----CCAUCCAUUCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
......--------....................((((.....))))((..(----((((......(((.....))).......)))))..))....((((......)))). ( -17.22)
>DroSim_CAF1 48993 108 + 1
UUCCCAUUUUCCCAUUUUCCUAUUUCCCCAUUUCCCCGCCCAUCGGGAGUUU----CCAUCCAUUCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
..................................((((.....))))((..(----((((......(((.....))).......)))))..))....((((......)))). ( -17.22)
>DroEre_CAF1 53205 100 + 1
UUCCCA--------UUUUCCCAUUUCCCCGUUUCCCCACCCAUCGGGAGUUU----CCAUCCAUUCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
......--------............((((.............))))((..(----((((......(((.....))).......)))))..))....((((......)))). ( -17.04)
>DroYak_CAF1 50940 100 + 1
UUUCCA--------UUUUCCCAUUUCCCCACUUCCCCACCCAUCGGGAGUUU----CCAUCCACGCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
......--------.................(((((........)))))...----.......(((((((((((((....)))..))))......))))))........... ( -19.60)
>consensus
UUCCCA________UUUUCCUAUUUCCCCAUUUCCCCGCCCAUCGGGAGUUU____CCAUCCAUUCCGUUCCAAGCGACUGCUAAUGGAUUCUACGCGGCGCUCUUCUGCCU
...............................(((((........))))).................((((((((((....)))..))))....))).((((......)))). (-15.28 = -15.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:04 2006