Locus 10272

Sequence ID 3R_DroMel_CAF1
Location 27,531,017 – 27,531,123
Length 106
Max. P 0.699833
window16364

overview

Window 4

Location 27,531,017 – 27,531,123
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -23.99
Consensus MFE -18.54
Energy contribution -19.20
Covariance contribution 0.66
Combinations/Pair 1.32
Mean z-score -1.62
Structure conservation index 0.77
SVM decision value 0.35
SVM RNA-class probability 0.699833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27531017 106 + 27905053
AUGAACAAAUUGAGCAGCGACUGUUUGGGUUGUUCAGGGUGGUGGUUCCAUGGUUGAAAGAAAGUCAGAGGGCACUAAGAAAAUAGGUCAACUAUGAUCAAUAAAA
.(((((((.(..(((((...)))))..).)))))))......((((..(((((((((.......((..((....))..)).......)))))))))))))...... ( -28.34)
>DroSec_CAF1 49017 94 + 1
AUGAACAAAUUGAGCAGCGACUUUUUGGUUUGUUCAGGGUGGUGGUUCCAUGGUUGAAAUAAAGUA-----------AGAAAAUAGGUCAACCAUAAUCAAUAGA-
.(((((((((..((.((...)).))..)))))))))......(((((..((((((((..((.....-----------......))..))))))))))))).....- ( -23.10)
>DroSim_CAF1 48235 105 + 1
AUGAACAAAUUGAGCAGCGACUUUUUGGUUUUUUCAGGGUGGUGGUUCCAUGGUUGAAAUAAAGUCAGAGGCCACUGAGAAAAUAGGUCAACCAUAAUCAAUAGA-
.(((.......((((.((.(((..((((.....))))))).)).)))).((((((((..((...((..((....))..))...))..))))))))..))).....- ( -23.20)
>DroEre_CAF1 52398 102 + 1
ACGAACAGAUUGAGGAGCGAUUUUUUGGUUUGUUCGGGGU---GGUUCACUGGUUGAAAGAAAGUCAGAGGGCGUUUAGAAAAUAGGUCAACCAUAAGCAAUAAA-
.(((((((((..(((((...)))))..)))))))))..((---((((.(((.(((....(((.(((....))).)))....))).))).))))))..........- ( -26.80)
>DroYak_CAF1 50137 98 + 1
AUGAACAAAUUGAGGAGCGAUUUUUCGGGUUAUUCGGGGU---GUUUCUUUGGUUGAACGAAAGUCAGAGGGCAAUUAGGAAAUAGGUCAACCAU---CAAUAA--
........(((((((..(((....)))........((..(---(((((((.(((((..(..........)..)))))))))))))..))..)).)---))))..-- ( -18.50)
>consensus
AUGAACAAAUUGAGCAGCGACUUUUUGGUUUGUUCAGGGUGGUGGUUCCAUGGUUGAAAGAAAGUCAGAGGGCACUUAGAAAAUAGGUCAACCAUAAUCAAUAAA_
.((((((((((((((((...))))))))))))))))(((.......)))((((((((.......((..((....))..)).......))))))))........... (-18.54 = -19.20 +   0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:03 2006