Locus 10271

Sequence ID 3R_DroMel_CAF1
Location 27,514,755 – 27,514,845
Length 90
Max. P 0.822834
window16363

overview

Window 3

Location 27,514,755 – 27,514,845
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -26.83
Consensus MFE -15.51
Energy contribution -17.62
Covariance contribution 2.11
Combinations/Pair 1.15
Mean z-score -2.94
Structure conservation index 0.58
SVM decision value 0.69
SVM RNA-class probability 0.822834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27514755 90 - 27905053
------UCCGCUCUCGAAACAAGCGGUUCG-CUCU-GCACUGAGCGGAAUUAUUAAUUGAUUGAUGAACACUAAUUAUGUUAAUUGGUUAAUGAAAUG
------.(((((.........)))))((((-(((.-.....))))))).((((((((..((((((.............))))))..)))))))).... ( -26.92)
>DroGri_CAF1 77703 89 - 1
------GCUGCCUUCGG--UGAGCAGCGCG-CUGCGAUUCUGCUUCGAAUUAUUAAUUGAUCGAUGAUAACUAAUUAUGUUAAUUGGAUAAUGAAAUG
------((((((.....--.).))))).((-..(((....)))..)).(((((((((((((..(((((.....)))))))))))).))))))...... ( -17.50)
>DroSec_CAF1 37498 89 - 1
-------CCGCUCUCGAAACGAGCGGUUCG-CUCU-GCACUGAGCGGAAUUAUUAAUUGAUUGAUGAACACUAAUUAUGUUAAUUGGUUAAUGAAAUG
-------((((((.......))))))((((-(((.-.....))))))).((((((((..((((((.............))))))..)))))))).... ( -30.92)
>DroEre_CAF1 38056 90 - 1
------UCCGCUCUCGAAACGAGCGGUUCG-CUCU-GCACUGAGCGGAAUUAUUAAUUGAUUGAUGAACACUAAUUAUGUUAAUUGGUUAAUGAAAUG
------.((((((.......))))))((((-(((.-.....))))))).((((((((..((((((.............))))))..)))))))).... ( -31.02)
>DroWil_CAF1 77417 94 - 1
UUGGCUUUGGCUUUG---GCCUGCGCUUCGACUUC-GAAGCGAACGGAAUUAUUAAUUGAUUGAUGAAAACUAAUUAUGUUAAUUGGAUAAUGAAAUG
..((((........)---)))..(((((((....)-)))))).......((((((.(..((((((.............))))))..).)))))).... ( -23.62)
>DroYak_CAF1 38076 90 - 1
------UCCGCUCUCGAAACGAGCGGUUCG-CUCU-GCACUGAGCGGAAUUAUUAAUUGAUUGAUGAACACUAAUUAUGUUAAUUGGUUAAUGAAAUG
------.((((((.......))))))((((-(((.-.....))))))).((((((((..((((((.............))))))..)))))))).... ( -31.02)
>consensus
______UCCGCUCUCGAAACGAGCGGUUCG_CUCU_GCACUGAGCGGAAUUAUUAAUUGAUUGAUGAACACUAAUUAUGUUAAUUGGUUAAUGAAAUG
.......((((((.......))))))((((.(((.......))))))).((((((((..((((((.............))))))..)))))))).... (-15.51 = -17.62 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:02 2006