Locus 10270

Sequence ID 3R_DroMel_CAF1
Location 27,513,024 – 27,513,115
Length 91
Max. P 0.779916
window16362

overview

Window 2

Location 27,513,024 – 27,513,115
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 74.11
Mean single sequence MFE -25.04
Consensus MFE -16.39
Energy contribution -16.25
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.30
Structure conservation index 0.65
SVM decision value 0.55
SVM RNA-class probability 0.779916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27513024 91 - 27905053
CCC-ACCCA-CCAGGUUA----------UAUAUGCACUCAGUCCCCAACGGGUUGCCUGCAGCAACUGCAACAGGUUCGUAAA-----UAACCAUCAAGUUGCGGGCG
...-.(((.-........----------....((((..(((.(((....))))))..))))((((((......((((......-----.))))....))))))))).. ( -24.80)
>DroSec_CAF1 35748 92 - 1
GCCCCACCA-CCCGGUUA----------UAUAUGCACUCAGGCCCCAACGGAUUGCCUGCAGCAACUGCAACAGGUUCGUAAA-----UAACCAUCAAGUUGCGGGCG
((((((...-...(((((----------(.((((.(((.((((((....))...))))((((...))))....))).)))).)-----))))).......)).)))). ( -27.32)
>DroSim_CAF1 35078 92 - 1
GCCCCACCA-CCCGGUUA----------UAUAUGCACUCGGGCCCCAACGGAUUGCCUGCAGCAACUGCAACAGGUUCGUAAA-----UAACCAUCAAGUUGCGGGCG
((((((...-...(((((----------(.((((.((..((((((....))...)))(((((...))))).)..)).)))).)-----))))).......)).)))). ( -27.62)
>DroEre_CAF1 36391 90 - 1
CC--------CGCCGCUA----------UAUGUGCACUCGGGCACCAACGGGUUGCCUGCGGCAACUGCAACAGGUUCGUAAAUAAAAUAACCAUCAAGUUGCGGGCG
((--------(((.(((.----------...((((......))))..((((...(((((..((....))..))))))))).................))).))))).. ( -29.40)
>DroYak_CAF1 36373 73 - 1
CCCUCACCAUCGCCGUUA----------UAUG--------------------UUGCCUGCAGCAACUGCAACAGGUUCGUAAA-----UAACCAUCAAGUUGCGGGCG
..........((((....----------...(--------------------((((.....)))))((((((.((((......-----.)))).....)))))))))) ( -18.40)
>DroAna_CAF1 40983 100 - 1
CUC-UCCCC-CCCUGUGGUGCUCCACCCUACAUUCCAU-AAAAUCCAACACCCUGCCUGCAGCAAGUGCAACAGGUUCGUAAA-----UAACCAUCAAGUUGCGGGCG
...-.....-....((((....))))............-...............(((((((((..(.....).((((......-----.)))).....))))))))). ( -22.70)
>consensus
CCC_CACCA_CCCGGUUA__________UAUAUGCACUCAGGCCCCAACGGAUUGCCUGCAGCAACUGCAACAGGUUCGUAAA_____UAACCAUCAAGUUGCGGGCG
......................................................(((((((((....))....((((............)))).......))))))). (-16.39 = -16.25 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:01 2006