Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,217,847 – 3,217,941 |
Length | 94 |
Max. P | 0.896194 |
Location | 3,217,847 – 3,217,941 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.52 |
Mean single sequence MFE | -22.53 |
Consensus MFE | -4.98 |
Energy contribution | -7.14 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.32 |
Mean z-score | -2.35 |
Structure conservation index | 0.22 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3217847 94 + 27905053 UUAUUAUGUCCCAUGAUUUCUCCUGAAAACUGUUAAGAU------------GAUUAGUUCAUCAAAACUGCGGUAUUCUGGAGA-AAUUGUAUCGAAAUCAUACGGA------------- ..........((..(((((((((.(((.(((((...(((------------((.....)))))......))))).))).)))))-))))((((.(....))))))).------------- ( -27.00) >DroVir_CAF1 48187 102 + 1 ACAUCAUGACACAUGAUUUCACAUAGAA-CUCAUAGAAUUGGAAAUUGACUGAAUGAUUCGUCUGA--UG--GGGAU-UGGAUAAAAGGACAACAAAAUUAGAUCGAC------------ .(((((.(((..((((.(((.....)))-.)))).((((((.............))))))))))))--))--..(((-(.(((..............))).))))...------------ ( -15.66) >DroSec_CAF1 42576 95 + 1 UUAUUAUGUCACAUGAUUUCUCCUGAAAACUGUUAAGAU------------GAUUACUUCAUCAGAAAUGCGGUGUUCUGGGGA-AAUUGUAUCGAAAUCAUACCGAU------------ ............(..((((((((.(((.(((((...(((------------((.....)))))......))))).))).)))))-)))..)((((.........))))------------ ( -24.90) >DroSim_CAF1 43927 95 + 1 UUAUUAUGUCACACGAUUUCUCCUGAAAACUGUUAAGAU------------GAUUACUUCAUCAGAAAUGCGGUGUUCUGGAGA-AAUUGUAUCGAAAUCAUACCGAU------------ ............(((((((((((.(((.(((((...(((------------((.....)))))......))))).))).)))))-))))))((((.........))))------------ ( -28.20) >DroEre_CAF1 36934 102 + 1 UUAUUAUGUCCCAUGAUUUCUCCUAAAAACUUUUAAGAA------------GAUUUAUUUAUCA--AAUGAAACAUUCUGGAGA-AAUUA---CGAAUGAAUACCGAUAUAUAUCGAUAA .((((...((...((((((((((((((....))))((((------------..((((((.....--))))))...)))))))))-)))))---.))...)))).((((....)))).... ( -16.90) >consensus UUAUUAUGUCACAUGAUUUCUCCUGAAAACUGUUAAGAU____________GAUUAAUUCAUCAGAAAUGCGGUGUUCUGGAGA_AAUUGUAUCGAAAUCAUACCGAU____________ ............(((((((((((.(((.(((((....................................))))).))).))))).))))))............................. ( -4.98 = -7.14 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:42 2006