Locus 10269

Sequence ID 3R_DroMel_CAF1
Location 27,510,899 – 27,510,993
Length 94
Max. P 0.996588
window16361

overview

Window 1

Location 27,510,899 – 27,510,993
Length 94
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 88.85
Mean single sequence MFE -29.72
Consensus MFE -28.30
Energy contribution -28.26
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.95
SVM decision value 2.72
SVM RNA-class probability 0.996588
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27510899 94 - 27905053
ACGAAGAUCCCCGGCGGGAGGGUAAGAAAAUUGUCUUGGCCUUCUGCACGUGCGUUUUCCACGGCAGCGAAAAGGGAAAAUAAGGAAAAC---------AAUG
.......((((..((((((((.(((((......))))).)))))))).((((.(....)))))..........)))).............---------.... ( -29.00)
>DroSec_CAF1 33639 94 - 1
ACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCCUCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAACAAGGAAAGU---------AAUG
.......(((((.((.(((((((((((......)))).)))))))((.((((.(....))))))).))...).)))).............---------.... ( -28.70)
>DroSim_CAF1 32972 87 - 1
ACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCUUCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAACAAGGAA----------------
.......(((...((((((((.(((((......))))).))))))))......(((((((.((....)).....)))))))..))).---------------- ( -29.90)
>DroEre_CAF1 34243 87 - 1
ACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCUUCUGCACGUGCGUUUUCCACGGCGGCGAAGAGGGAAAAUGAGGAA----------------
.......(((...((((((((.(((((......))))).)))))))).....((((((((....(......)..)))))))).))).---------------- ( -30.50)
>DroYak_CAF1 34194 103 - 1
ACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCUUCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAACAAGGAAAAUAGUGAAGCUAAUG
.......(((...((((((((.(((((......))))).))))))))......(((((((.((....)).....)))))))..)))...(((.....)))... ( -30.50)
>consensus
ACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCUUCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAACAAGGAAA___________AAUG
.......(((...((((((((.(((((......))))).))))))))......(((((((.((....)).....)))))))..)))................. (-28.30 = -28.26 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:00 2006