| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,502,346 – 27,502,439 |
| Length | 93 |
| Max. P | 0.785584 |
| Location | 27,502,346 – 27,502,439 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 71.94 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -14.48 |
| Energy contribution | -15.82 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27502346 93 - 27905053 UGG-------AAUUGUAGGUGGCACAGACUGACCACAAGUGGCAGAAUGUCCAGGCCAGUGAAGCUGCUGGCAGGGAUAGUCACAGUAGGAUGUGUUCCA .((-------(((.....(((((.....(((.(((....))))))..(((((..((((((......))))))..))))))))))..........))))). ( -35.76) >DroVir_CAF1 80551 98 - 1 UGCG-AUUGCGUCUG-UAGUGUGGCCGCCUGGCCGCAGCUGGCCGAGUGUCGCUGCCAGUGCAUUUGCUGGCAGGGAUAGUCACAGUACGACGUAUUCCA .(.(-(.((((((.(-((.((((((((.(((....))).)))))((.((((.((((((((......)))))))).)))).))))).))))))))).))). ( -51.80) >DroEre_CAF1 25860 93 - 1 UGG-------GAGGGCCGAUGGCACAGACUGACCACAAGAGGCUGAGUGUCUAGGCCAGUGCAACUGCUGGCAGGGAUAGUCACAAUAAGAGGUAUUCCA ..(-------(((.((((.(((((.....)).)))).......(((.(((((..((((((......))))))..))))).)))........))).)))). ( -32.10) >DroYak_CAF1 25756 93 - 1 UGG-------GAUUGCCGAUGGCACAGACUGACCACAAGAGGCAGAGUGUCUAGGCCAAUGCAACUGCUGGCAGGGAUAGUCACAGUAAGAGGUAUUCCA ..(-------((.((((....((......((.((......))))((.(((((..((((..((....))))))..))))).))...))....)))).))). ( -30.20) >DroAna_CAF1 27602 95 - 1 UGA-UU---CAGCUGCAUGUUGGAC-GCCUGCCCACAAGUGCUCGAGUGCUUGACCCAGUGCAUCUGCUGGCAAGGAUAGUCACAGUACGAGGUGUUCCA ...-..---((((.....))))(((-((((..((.((((..(....)..))))..(((((......)))))...))...((......)).)))))))... ( -26.20) >DroPer_CAF1 26589 95 - 1 UCA-CC---CAGCCC-CAGUGCGCUGGCCUGGCCGCAUGUGGCCGAAUGACGCUGCCAGUGCAUCUGCUGGCAAGGAUAGUCGCAGUAGGAGGUGUUCCA .((-((---...((.-.(.(((((((.((((((((....))))).........(((((((......)))))))))).))).)))).).)).))))..... ( -38.90) >consensus UGG_______AACUGCCGGUGGCACAGACUGACCACAAGUGGCCGAGUGUCUAGGCCAGUGCAUCUGCUGGCAGGGAUAGUCACAGUAAGAGGUAUUCCA ............................(((.(((....)))..((.(((((..((((((......))))))..))))).)).))).............. (-14.48 = -15.82 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:59 2006