Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,501,560 – 27,501,653 |
Length | 93 |
Max. P | 0.778762 |
Location | 27,501,560 – 27,501,653 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -20.97 |
Energy contribution | -22.28 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.37 |
Mean z-score | -1.11 |
Structure conservation index | 0.75 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27501560 93 - 27905053 CAGGUUGUCCACUGUUAGUAAUUGAUUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUCGAGA ..((((.((((((.(((((.((((((((((((......((((......)))).)))))))...)))))...))))).)))))).).))).... ( -28.40) >DroSec_CAF1 24879 93 - 1 CAGGUUGUCUACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGCGGAAUACUCAGUCCGGCUAAAGGUGGGGGCAUCGAGA ..((((.((((((.(((((.(((((((.((((.((.(.((((......))))).)))))).)))))))...))))).)))))).).))).... ( -30.60) >DroSim_CAF1 23928 93 - 1 CAGGUUGUCCACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUCGAGA ..((((.((((((.(((((.(((((((.(((((.(...((((......)))).).))))).)))))))...))))).)))))).).))).... ( -32.40) >DroEre_CAF1 25079 93 - 1 CGGGUUGUCCGCAGUUAGUAAUUGAGUCCUCCUGUGAUGUGGAGCUGGCCAUUGGAGGAACACUAAAUCCGGCUAAUGGUGGGGGCAUAGACA .(...(((((.(................((((........))))...((((((((.(((........)))..))))))))).)))))....). ( -27.10) >DroWil_CAF1 62307 81 - 1 UAGAUUCAGCGCUUGAAGUU----AGUGUGCU-G-GAUGGUGGAG------UUGGUGGCACACUCAGAUCAGCUAGAGGCGGUGGUAAAGAUA .....(((.(((((..((((----((((((((-(-(((......)------))..)))))))))......))))..))))).)))........ ( -21.30) >DroYak_CAF1 25016 93 - 1 CGGGUUGACCACUGUUGGUAAUUGAGUCUUCCUGUGAUGUGGACGUGGCCAUUGGAGGAAUAGUCAAACCGGCUAGUGGCGGGGGCAUAGACA ....(((.(((((((((((..((((.(.(((((.(...((((......)))).).))))).).)))))))))).))))))))........... ( -28.60) >consensus CAGGUUGUCCACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUAGAGA ...(((.(((((..(((((.(((((((.(((((.(...((((......)))).).))))).)))))))...)))))..))))))))....... (-20.97 = -22.28 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:58 2006