Locus 10266

Sequence ID 3R_DroMel_CAF1
Location 27,501,342 – 27,501,446
Length 104
Max. P 0.829676
window16358

overview

Window 8

Location 27,501,342 – 27,501,446
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -42.57
Consensus MFE -32.35
Energy contribution -34.38
Covariance contribution 2.03
Combinations/Pair 1.26
Mean z-score -2.32
Structure conservation index 0.76
SVM decision value 0.71
SVM RNA-class probability 0.829676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27501342 104 - 27905053
UGCCGCCUUGCUCCACUGGAAUCACUACCAUGUUGGAUCGGAGCAAAGAAGACGUGUUUGUGGCUGGUGGAGCAGUCGCCGGUGGGGAGGUUGGGAUACGAUCG
..((((((((((((((..(...(((...((((((...((........)).))))))...))).)..))))))))).....)))))...(((((.....))))). ( -40.00)
>DroSec_CAF1 24661 104 - 1
UGCUGCCCUGCUCCACUGGAAUCACUACCAUGUUGGAUCGGAGCAAAGAAGACGUGUUGGUGGCUGGUGGAGCAGUCGCCGGUGGGGAGAUCGGGACACGAUCG
..(..(((((((((((..(...(((((.((((((...((........)).)))))).))))).)..))))))))).....))..)...(((((.....))))). ( -45.20)
>DroSim_CAF1 23710 104 - 1
UGCUGCCCUGCUCCACUGGAAUCACUACCAUGUUGGAUCGGAGCAAAGAAGACGUGUUGGUGGCUGGUGGAGCAGUCGGCGGUGGGGAGAUCGGGAUACGAUCG
.(((((((((((((((..(...(((((.((((((...((........)).)))))).))))).)..)))))))))..)))))).....(((((.....))))). ( -50.30)
>DroEre_CAF1 24861 104 - 1
UGCCGCCCUGCUCCACUGGAAUCACUACCAUAUUGGAUCUGAGCAAAGAAGACGUGGUGGUGGCUGGUGCAGCAGUCCCCGGUGGGGAGGUUGGGAUACGUUCG
..(((.(((.(((((((((...((((((((..((...(((......))).))..))))))))((((...)))).....)))))))))))).))).......... ( -42.60)
>DroWil_CAF1 62093 94 - 1
CGCCUGCCUGUUCGACGGGAAUUACUACCAUGUGGGAUCUGAGCAAACUUGAUGUGGUUGUUGCCGGUGUAGCACUCAA----------AUUGGGGCCCAAACA
.(((((((.((((.(((((........)).))).))))..).)))...(..((.((..((((((....))))))..)).----------))..))))....... ( -22.20)
>DroYak_CAF1 24798 104 - 1
UGCCGCCCUGCUCCACUGGAAUCACUACCAUGUUGGAUCUGAGCAAAGAAGACGUGGUGGUGGCUGGUGGAGCAGUUCCCGGCGGAGAGGUUGGGAUACGAUCG
..((((((((((((((..(...((((((((((((...(((......))).)))))))))))).)..))))))))).....)))))...(((((.....))))). ( -55.10)
>consensus
UGCCGCCCUGCUCCACUGGAAUCACUACCAUGUUGGAUCGGAGCAAAGAAGACGUGGUGGUGGCUGGUGGAGCAGUCGCCGGUGGGGAGAUUGGGAUACGAUCG
..(((((((((((((((((...(((((.((((((...((........)).)))))).))))).)))))))))))).....)))))...(((((.....))))). (-32.35 = -34.38 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:57 2006