| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,484,943 – 27,485,063 |
| Length | 120 |
| Max. P | 0.623069 |
| Location | 27,484,943 – 27,485,063 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.44 |
| Mean single sequence MFE | -38.91 |
| Consensus MFE | -28.55 |
| Energy contribution | -28.42 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27484943 120 + 27905053 UGCACCUGCAAGUGGACCAAUGGCAAGAAGUCGGCCAUCUGCAGCUCCCUGCAGCUGACCACCAUUCCGAACACCCUGAGCACAGAGCUGCAGGUGCUGGUGCUCAAUGACAACCACAUC .((((((((.(((((......(((.....)))((.((.((((((....)))))).)).)).)))))............(((.....)))))))))))((((.(.....)...)))).... ( -40.50) >DroVir_CAF1 59211 120 + 1 UGCACCUGCAAGUGGACCAAUGGAAAAAAGUCGGCCAUAUGCAGCUCAUUACAGCUGACGAGUAUACCGACCACGCUGAGCACCGAACUGCAGGUGCUGGUGCUCAAUGAUAAUCAUAUA .(((((....((((..((...))......(((((..((((.(((((......)))))....)))).)))))..)))).((((((........)))))))))))...(((.....)))... ( -37.40) >DroGri_CAF1 42630 120 + 1 UGUACCUGCAAGUGGACCAAUGGCAAAAAGUCGGCCAUAUGCAGCUCGCUGCAAUUGACUAGCAUACCGACAACGUUGAGCACCGAGCUGCAGGUCCUGGUGCUUAACGAUAAUCACAUA .(((((.......(((((.(((((.........))))).(((((((((.(((..(..((...............))..)))).)))))))))))))).)))))................. ( -41.46) >DroWil_CAF1 44421 120 + 1 UGCACUUGCAAAUGGACUAAUGGCAAAAAGUCGGCUAUCUGUAGCUCCCUACAGCUAAGCAGUAUACCAAGCACAUUGAGCACUGAGCUGCAGGUUUUGGUGCUCAAUGACAAUCACAUA (((....)))..(((.....((((.....))))(((..((((((....))))))...)))......)))....((((((((((..(((.....).))..))))))))))........... ( -35.00) >DroMoj_CAF1 57050 120 + 1 UGCACCUGCAAAUGGACAAAUGGCAAAAAGUCAGCCAUAUGCAGCUCGCUGCAGCUGACGAGCAUACCGAACACGCUGAGCACUGAGCUGCAGGUGCUGGUGCUCAAUGAUAAUCACAUA .(((((.(((.((((.....((((.....)))).)))).(((((((((((.((((((.((.......))..)).)))))))...))))))))..))).)))))................. ( -42.40) >DroAna_CAF1 8537 120 + 1 UGUACCUGCAAGUGGACCAACGGCAAGAAGUCGGCCAUCUGCAGCUCCCUGCAGCUGACCACCAUUCCGAAUACACUGAGCACGGAGCUCCAGGUGCUGGUGCUGAACGACAACCACAUU .(((((((..((((......(((......((((((....(((((....))))))))))).......)))....))))((((.....)))))))))))((((...........)))).... ( -36.72) >consensus UGCACCUGCAAGUGGACCAAUGGCAAAAAGUCGGCCAUAUGCAGCUCCCUGCAGCUGACCAGCAUACCGAACACGCUGAGCACCGAGCUGCAGGUGCUGGUGCUCAAUGACAAUCACAUA (((....))).((((.....(((......((((((....(((((....))))))))))).......)))....((.(((((((((.((.....))..))))))))).))....))))... (-28.55 = -28.42 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:55 2006