| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,480,724 – 27,480,827 |
| Length | 103 |
| Max. P | 0.677212 |
| Location | 27,480,724 – 27,480,827 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.67 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27480724 103 - 27905053 AAGCACGUGCGAAUGUGCGUGCAAAUGCAAAUGGCGAUGGAAAACUUUUUAAAUUGAGCAAACAUUAACAAAAAGGCAAAUCCAGAAGUGGGCGGAACUUUUC- ..(((((..(....)..)))))...(((..((.....((((...((((((...((((.......)))).)))))).....))))...))..))).........- ( -21.60) >DroPse_CAF1 2670 98 - 1 UAGCACGUGCGAAUGUGCGUGCAAAUGCAAAUGGCGAUAGAAAACUUUUUAAAUUGAGCAAACAUUAACAAAAAGGCAAAUCUAGAAGUGGAUCAGG-----A- ..(((((..(....)..))))).........(.((..((((...((((((...((((.......)))).)))))).....))))...)).)......-----.- ( -18.00) >DroGri_CAF1 37799 86 - 1 AGGCAAGUGCGAAUGUGCGUGCGAAUGCAAAUUGCGAUAGAAAACUUUUAAAAUUGAGCAAACAUUAACACAA-CAAAAAAAAAGU---A-------------- ......(((..(((((((((....))))...((((......................)))))))))..)))..-............---.-------------- ( -13.15) >DroMoj_CAF1 49512 87 - 1 AGGCACGUGCGAAAGUGCGUGCAAAUGCAAAUGGCGAUAGAAAACUUUUUAAAUUGAGCAAACAUUAACGAAAAGGCAAAACAAGU---G-------------- ..(((((..(....)..)))))...(((.....)))........((((((...((((.......)))).))))))...........---.-------------- ( -19.70) >DroAna_CAF1 4193 104 - 1 AAGCACGUGCGAAUGUGCGUGCAAAUGCAAAUGGCGAUAGAAAACUUUUUAAAUUGAGCAAACAUUAACAAAAAGGCAAAUUCAGAAGUGGUUGUUGCUCGCCA ..(((((..(....)..))))).........((((((.......((((((...((((.......)))).))))))((((..(((....)))...)))))))))) ( -27.10) >DroPer_CAF1 3412 98 - 1 UAGCACGUGCGAAUGUGCGUGCAAAUGCAAAUGGCGAUAGAAAACUUUUUAAAUUGAGCAAACAUUAACAAAAAGGCAAAUCUAGAAGUGGAUCAGG-----A- ..(((((..(....)..))))).........(.((..((((...((((((...((((.......)))).)))))).....))))...)).)......-----.- ( -18.00) >consensus AAGCACGUGCGAAUGUGCGUGCAAAUGCAAAUGGCGAUAGAAAACUUUUUAAAUUGAGCAAACAUUAACAAAAAGGCAAAUCAAGAAGUGG_U___G_______ ..(((((..(....)..)))))...(((.(((......((....))......)))..)))............................................ (-13.64 = -13.67 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:54 2006