Locus 10262

Sequence ID 3R_DroMel_CAF1
Location 27,479,203 – 27,479,301
Length 98
Max. P 0.672057
window16354

overview

Window 4

Location 27,479,203 – 27,479,301
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.77
Mean single sequence MFE -25.98
Consensus MFE -20.14
Energy contribution -20.18
Covariance contribution 0.04
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 0.29
SVM RNA-class probability 0.672057
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27479203 98 - 27905053
---------------UUACCAUUUACA-------AUUUACAAUUUCUGUGUUAAUAGGAAAGGCGGUAUUGAUUGAGUUGGCUUAUUGGCAGCUUAUAAAUAGCAAUGCUUUUCCAGCCC
---------------............-------...((((.....))))......(((((((((.((((...(((((((.(.....).)))))))..))))....)))))))))..... ( -23.30)
>DroSec_CAF1 2776 98 - 1
---------------UUGCCAUUUACA-------AUUUACCAUUUCUGUGUUAAUAGGAAAGGCGGUAUUGAUUGAGUUGGCUUAUUGGCAGCUUAUAAAUAGCAAUGUUUUUCCAGCCC
---------------((((.(((((((-------(((..((.(((((((....))))))).))..).))))..(((((((.(.....).)))))))))))).)))).............. ( -24.00)
>DroSim_CAF1 1247 98 - 1
---------------UUGCCAUUUACA-------AUUUACCAUUUCUGUGUUAAUAGGAAAGGCGGUAUUGAUUGAGUUGGCUUAUUGGCAGCUUAUAAAUAGCAAUGUUUUUCCAGCCC
---------------((((.(((((((-------(((..((.(((((((....))))))).))..).))))..(((((((.(.....).)))))))))))).)))).............. ( -24.00)
>DroEre_CAF1 2848 119 - 1
AUUGCCAUUUACCAUUUACCAUUUACAAUUCACCAUUCACCAUUUCUGUGUUAAUAGGAAAGGCGGUAUUGAUUGAGUUGGCUUAUUGGCAGCUUAUAAAUAGCAAUGCU-UUCCAGCCC
(((((.(((((..............(((((((.((.((.((.(((((((....))))))).)).))...))..)))))))(((....)))......))))).)))))(((-....))).. ( -25.50)
>DroYak_CAF1 2287 108 - 1
----CCAUUCAGCAUUCAGCACUCAC-------CAUUCAGCAUUUGUGUGUUAAUAGGAGAGGCGGUGCUGAUUGAGUUGGCUCAUUGGCAGCUUAUAAAUAGCAAUGUU-UUCCAGCCG
----.((.(((((((...((.(((.(-------((((.(((((....)))))))).)).))))).))))))).))....((((....(((((((.......)))..))))-....)))). ( -33.10)
>consensus
_______________UUACCAUUUACA_______AUUUACCAUUUCUGUGUUAAUAGGAAAGGCGGUAUUGAUUGAGUUGGCUUAUUGGCAGCUUAUAAAUAGCAAUGUUUUUCCAGCCC
........................................................(((((((((.((((...(((((((.(.....).)))))))..))))....)))))))))..... (-20.14 = -20.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:53 2006