| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,475,475 – 27,475,580 |
| Length | 105 |
| Max. P | 0.608230 |
| Location | 27,475,475 – 27,475,580 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 94.60 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -22.24 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27475475 105 + 27905053 CGUUUGACACAUAAAACCGUUUUGUGACUCAUUAAAGCCGGCAAUGUCGCCCAUUGUGGGCGUGGCAAAUGUGAGUUAAUUACACAACGCCCACACACAUAUACA .((((........)))).((..((((.............(((......)))...(((((((((......(((((.....)))))..)))))))))))))...)). ( -28.80) >DroSec_CAF1 31277 105 + 1 CGUUUGACACAUAAAACCAUUUUGUGACUCAUUAAAGCCGGCAAUGUCGCCCAUUGUGGGCGUGGCAAAUGUGAGUUAAUUACACAACGAACACAGACACACACA .(((((...((((((.....))))))((((((....((((((...)))((((.....))))..)))....)))))).................)))))....... ( -28.00) >DroEre_CAF1 31249 104 + 1 CGUUUGACACAUAAAACCGUUUUGUGACUCAUUAAAGCCGGCAAUGUCGCCCAUUGUGGGCGUGGCAAAUGUGAGUUAAUUACACAACGCACACACACACACAC- .((((........))))((((.((((((((((....((((((...)))((((.....))))..)))....)))))))....))).))))...............- ( -26.60) >DroAna_CAF1 45005 105 + 1 CGUUUGACACAUAAAACCGUUUUGUGACUCAUUAAAGCCGGCAAUGUGGCCCAUUGUGGGCGUGGCAAAUGCGAGUUAAUUACACAACACACUCACACAUACACA .((((........)))).((.(((((((((......(((.((((((.....)))))).)))...((....))))))......))))).))............... ( -24.90) >consensus CGUUUGACACAUAAAACCGUUUUGUGACUCAUUAAAGCCGGCAAUGUCGCCCAUUGUGGGCGUGGCAAAUGUGAGUUAAUUACACAACGCACACACACACACACA .((((........)))).((.(((((((((((....((((((...)))((((.....))))..)))....))))))......))))).))............... (-22.24 = -22.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:52 2006