| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,474,320 – 27,474,419 |
| Length | 99 |
| Max. P | 0.923175 |
| Location | 27,474,320 – 27,474,419 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.59 |
| Mean single sequence MFE | -20.46 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.66 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27474320 99 - 27905053 AUUCA---AAUCCUGCCCACCUGGGUCUCCAUCCCGUCGCA---CACAC----------ACUUCCCAGGGCC---UUCUGAUCUA-ACAAUUAGACUCCGGGUUACAUUCACAAAUU-UG .....---......((((.((((((................---.....----------....))))))...---.((((((...-...))))))....))))..............-.. ( -19.11) >DroSec_CAF1 30129 99 - 1 AUUCA---AAUCCUGCCCACCUGGGCCUCCAUCCCGGCGCA---CACAC----------AUUUCCCGGGGCC---UUCUGAUCUA-ACAAUUAGACUCCGGGUUACAUUCACAAAUU-UA .....---.....(((((....))(((........))))))---.....----------....(((((((..---.((((((...-...)))))))))))))...............-.. ( -23.00) >DroSim_CAF1 30057 99 - 1 AUUCA---AAUCCUGCCCACCUGGGCCUCCAUCCCGGCGCA---CACAC----------AUUUCCCGGGGCC---UUCUGAUCUA-ACAAUUAGACUCCGGGUUACAUUCACAAAUU-UG ...((---(((..(((((....))(((........))))))---.....----------....(((((((..---.((((((...-...)))))))))))))............)))-)) ( -23.40) >DroEre_CAF1 30068 91 - 1 --------------GCCCACCUGGGCCUCCACCCUUGCACAUUGCACAC----------AUUUCCCAGGACC---UGCUGAUCUA-ACAAUUAGACUCCGGGUUACAUUCACAAAUU-UG --------------((((.((((((..........(((.....)))...----------....))))))...---..(((((...-...))))).....))))..............-.. ( -19.83) >DroYak_CAF1 31331 103 - 1 AUUGA---AAUCCUGCCCACCUGGGCCUCCACCCUUGCACAUUGCACAC----------AUUUCCCGGGGCC---UUCUGAUCUAAACAAUUAGACUCCGGGUUACAUUCACCAAUU-UG ..(((---(.....((((....)))).........(((.....)))...----------....(((((((..---.((((((.......))))))))))))).....))))......-.. ( -25.20) >DroAna_CAF1 43810 114 - 1 AUUCAGAAAAUUCCCUCCACUUUGUCA-CAAACAC-ACACA---CACACAAACACAGAAAAUUUACAGGCUCUCGUCCUGAUCCA-ACAAUUAGAGUCCGGGUUAUAUUCACAAAUUUUC .....(((.((..(((..(((((((..-...))..-.....---.....................(((((....).)))).....-......)))))..)))..)).))).......... ( -12.20) >consensus AUUCA___AAUCCUGCCCACCUGGGCCUCCAUCCCGGCACA___CACAC__________AUUUCCCAGGGCC___UUCUGAUCUA_ACAAUUAGACUCCGGGUUACAUUCACAAAUU_UG ..............((((.((((((......................................))))))........(((((.......))))).....))))................. (-12.52 = -12.66 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:52 2006