| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,470,798 – 27,470,909 |
| Length | 111 |
| Max. P | 0.688944 |
| Location | 27,470,798 – 27,470,909 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.93 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27470798 111 - 27905053 GUACAA-AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAUACCAGCCGAAAGGCGAUAGUGCACUCAGAAAAACAUUAGCGCCUAGCUUAUUAGUUUG ((((.(-((((((.....)))))))(((((.........)))))..............(((....)))....))))........((((...(((.....))).....)))). ( -26.70) >DroSec_CAF1 26655 110 - 1 GUACAA-AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAAGCCAGCCGAAAGGCGAUAGUGCACUCAGAAAAACAUCAGUGCCUAGC-UAUUAGUUUG .....(-((((((.....)))))))(((((.........)))))...(((...(((..(((....)))..(((.(((((..((......))))))))))))-)....))).. ( -29.00) >DroSim_CAF1 26524 111 - 1 GUACAA-AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAAGCCAGCCGAAAGGCGAUAGUGCACUCAGAAAAACAUCAGUGCCUAGCUUAUUAGUUUG .....(-((((((.....)))))))(((((.........)))))........((((..(((....)))..(((.(((((..((......))))))))))))))......... ( -29.70) >DroEre_CAF1 26551 92 - 1 GUACAA-AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAAGCCAGGCGAAAGGCGAUAGUGCACUCAGAAAAACAC-------------------UUG ((((.(-((((((.....)))))))(((((.........)))))..........(((........)))....))))..............-------------------... ( -19.70) >DroYak_CAF1 27696 92 - 1 GUGCAA-AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAAGCCAGUCGAAAGGCGAUAGUACACUCAGAAAAACAC-------------------UUG .(((.(-((((((.....))))))).))).......(((.(((((.(..(....)...(((....)))).))))).)))...........-------------------... ( -23.00) >DroAna_CAF1 39847 86 - 1 GUACAAAAGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCCAACAACGAACACGGCCCGAAAGGCGAUAGUGCAGUUGGAAAA-------------------------- ......(((((((.....))))))).((((.........))))...((((...(((..(((....)).)...)))..)))).....-------------------------- ( -21.80) >consensus GUACAA_AGUGCUUACCAAGCGCUUAGCGAUUAAUCAGUUUGCUAACAACGAAAGCCAGCCGAAAGGCGAUAGUGCACUCAGAAAAACAU___________________UUG ((((....(((((.....)))))(((((((.........)))))))............(((....)))....)))).................................... (-19.99 = -20.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:49 2006