Locus 10257

Sequence ID 3R_DroMel_CAF1
Location 27,469,917 – 27,470,026
Length 109
Max. P 0.982081
window16348

overview

Window 8

Location 27,469,917 – 27,470,026
Length 109
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.01
Mean single sequence MFE -32.25
Consensus MFE -18.48
Energy contribution -19.38
Covariance contribution 0.91
Combinations/Pair 1.37
Mean z-score -2.42
Structure conservation index 0.57
SVM decision value 1.90
SVM RNA-class probability 0.982081
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27469917 109 - 27905053
UGGCGUCGGUCUUGGAGCCAUCGCCAUUGUUGUUGUCGGCAUAAGGACGUGUUACUUACACUUUGCCUUAUGUACAUUGGGCGCCGAUACAUAUAUG-CAAUGUGUAACA
.(((((((((..((....))..)))........(((..((((((((..((((.....))))....)))))))))))...))))))(.(((((((...-..))))))).). ( -36.20)
>DroPse_CAF1 31348 96 - 1
UGUUGUUGGUGUUG----------CAUGGAUGU---UGGUGUAAGGACGUGUUACUUACACUUUGCCUUAUGUACU-UAAAUGCCUAUACAUAUGUAAUAAUAUGUAACA
.......(((((((----------(((((..((---.((((((((.........))))))))..)).)))))))..-...)))))..(((((((......)))))))... ( -22.70)
>DroSec_CAF1 25790 109 - 1
UGGCGUUGGUCUUGGAGCCUUCGCCAUUGUUGUUGGCGGCAUAAGGACGUGUUACUUACACUUUGCCUUAUGUACAUUGGGCGCCAAUACAUAUAUG-CAAUGUGUAACA
..((((..((.((((.((((.(((((.......)))))((((((((..((((.....))))....)))))))).....)))).)))).))....)))-)........... ( -38.40)
>DroSim_CAF1 25642 109 - 1
UGGCGUUGGUCUUGGAGCCUUCGCCAUUGUUGUUGGCGGCAUAAGGACGUGUUACUUACACUUUGCCUUAUGUACAUUGGGCGCCAAUACAUAUAUG-CAAUGUGUAACA
..((((..((.((((.((((.(((((.......)))))((((((((..((((.....))))....)))))))).....)))).)))).))....)))-)........... ( -38.40)
>DroEre_CAF1 25669 96 - 1
-------------GGAGCCUUCGCCAUUGUUGUUGGCGGCGUGAGGACGUGUUACUUACACUUUGCCUUAUGUACUCUGGCCGCUGAUACAUAUAUG-CAAUGUGUAACA
-------------.(.(((..(((((.......)))))((((((((..((((.....))))....)))))))).....)))).....(((((((...-..)))))))... ( -30.30)
>DroAna_CAF1 38730 91 - 1
UGGCGUUGGUGUUGG--------------UUAUUGUUGGCGUAAGGACGUGUUACUUACACU-UGCCUUAUGUAUU-UAAAGACUGAUACAU--AUG-UAAUACGUAACG
..((((..((((..(--------------((.(((...((((((((..((((.....)))).-..))))))))...-))).)))..))))..--)))-)........... ( -27.50)
>consensus
UGGCGUUGGUCUUGGAGCCUUCGCCAUUGUUGUUGGCGGCAUAAGGACGUGUUACUUACACUUUGCCUUAUGUACAUUGGGCGCCGAUACAUAUAUG_CAAUGUGUAACA
.((((((......((........)).............((((((((..((((.....))))....))))))))......))))))..(((((((......)))))))... (-18.48 = -19.38 +   0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:48 2006