Locus 10255

Sequence ID 3R_DroMel_CAF1
Location 27,468,193 – 27,468,290
Length 97
Max. P 0.924943
window16345

overview

Window 5

Location 27,468,193 – 27,468,290
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -27.36
Consensus MFE -22.09
Energy contribution -21.40
Covariance contribution -0.69
Combinations/Pair 1.26
Mean z-score -2.02
Structure conservation index 0.81
SVM decision value 1.17
SVM RNA-class probability 0.924943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27468193 97 + 27905053
GACGCACUG--UUUAAUAUUUAUUAAAAAGUCAUGUGCGU--GCGCUACAUCGCCGGGGAAUUACAAUACUC------------------GUAUUUCCCCCCGGUGGCGACAAAUGAAC-
.((((((((--((((((....))))))....)).))))))--.((((((......((((((.(((.......------------------))).))))))...))))))..........- ( -29.90)
>DroPse_CAF1 30019 94 + 1
GACGCACUG--UUUAAUAUUUAUUAAAAAGUCAUGUGCGUGUGCGCUGCAUCGCCGGGGAAUUACAAUAUU------------------------UGUCCUUGGCGGCGACAAAUGAAAA
..((((((.--((((((....)))))).))).(((((((....))).))))(((((((((...........------------------------..))))))))))))........... ( -25.92)
>DroEre_CAF1 23991 102 + 1
GACGCACUG--UUUAAUAUUUAUUAAAAAGUCAUGUGCGU--ACGCUGCAUCGCCGGGGAAUUACAAUUUUCCCCC------CAAU-------UUUCCCCCCGGUGGCGACAAAUGAAC-
.((((((((--((((((....))))))....)).))))))--........(((((((((((........)))))).------....-------...((....)).))))).........- ( -27.20)
>DroYak_CAF1 25078 115 + 1
GACGCACUG--UUUAAUAUUUAUUAAAAAGUCAUGUGCGU--GCGCUGCAUCGCCGGGGAAUUACAAUAUUUCCCCACUUUCCCAUUUCCCCAUUUCCCGCUGGUGGCGACAAAUGAAC-
.((((((((--((((((....))))))....)).))))))--........(((((((((((.........))))))..............(((........))).))))).........- ( -29.00)
>DroAna_CAF1 36585 91 + 1
AACGCACUGUGUUUAAUAUUUAUUAAAAAGUCAUGUGCGU--G--CUGCAUCACUGGGGAAUUACAAUA------------------------UUUCUCUCCGGCGGCGACAAAUGAAC-
.((((((((..((((((....))))))....)).))))))--(--((((......(((((((......)------------------------))))))....)))))...........- ( -25.40)
>DroPer_CAF1 27801 93 + 1
GACGCACUG--UUUAAUAUUUAUUAAAAAGUCAUGUGCGUGUGCGCUGCAUCGCCAGGGAAUUACAAUAUU------------------------UGUCCUUGGCGGCGACAAAUGAAA-
..((((((.--((((((....)))))).))).(((((((....))).))))(((((((((...........------------------------..))))))))))))..........- ( -26.72)
>consensus
GACGCACUG__UUUAAUAUUUAUUAAAAAGUCAUGUGCGU__GCGCUGCAUCGCCGGGGAAUUACAAUAUU______________________UUUCCCCCCGGCGGCGACAAAUGAAC_
.((((((((..((((((....))))))....)).))))))........(..((((((((.......................................))))))))..)........... (-22.09 = -21.40 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:45 2006