| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,462,651 – 27,462,755 |
| Length | 104 |
| Max. P | 0.929799 |
| Location | 27,462,651 – 27,462,755 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -13.23 |
| Energy contribution | -14.58 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27462651 104 - 27905053 ACAAAAAAUAAGCUAUA----GCUAUAUAGCUGUAUAGCCCCAAGUCGGCG------GACUGGGCCGAUGGAGUGUCAGCGGGCGAAAAGUAAUGGCGAAAAAAAA-----AUAAUAAG ...........((((((----(((....))))))...((((...((((((.------......))))))...((....))))))..........))).........-----........ ( -25.60) >DroSec_CAF1 18541 102 - 1 ACAAAAAACAAGCUAUA----GCUAUAUAGCCGUAUAGCUCCAAGUCGGCG------GACUGGGGCGAUGGAGUGUCGGCGGGCGAAAAGUAAUGGCGAAA--AAA-----AUAAUAAG ...........(((((.----(((.....(((((...((((((.(((....------)))))))))(((.....))).)).)))....))).)))))....--...-----........ ( -27.80) >DroSim_CAF1 18443 101 - 1 ACAAAAAAUAAGCUAUA----GCUAUAUAGCCGUAUAGCCCCAAGUCGGCG------GACUGGGGCGAUGGAGUGUCAGCGGGCGA-AAGUAAUGGCGUAA--AAA-----AUAAUAAG ...........(((((.----(((((((..((((...((((((.(((....------))))))))).)))).)))).)))..((..-..)).)))))....--...-----........ ( -33.60) >DroEre_CAF1 18453 100 - 1 ACAAAAAAUAAGCUAUA----GC--------UAUAUAGCCCCAAGUCGGCGAUGGGCGACUGGGGCGAUGGAGUGUCAGCGGGCGCAAAGUAAUGGGCAAA--AAA-----AUAAUAAG ...........(((...----.(--------(((...((((((.((((.(....).)))))))))).)))).(((((....))))).........)))...--...-----........ ( -32.10) >DroYak_CAF1 19334 102 - 1 ACAAAAAAUAAGCUAUA----GCU-----GCUAUAUAGCCCCAAGUCGGCG------GACUGGGGCGAUGGAGUGUCAGCGGGCGAAAAGUAAUGGGGAAA--AAAAUAAAAUAAUAAG ...........(((...----(((-----(((((...((((((.(((....------))))))))).)))).....)))).))).................--................ ( -27.10) >DroAna_CAF1 20529 96 - 1 ACAAAAAAUAAGCUAUACCAGGCUAUACGGCAGGCUA---------CGGC-----------AGGACGAUGGAGUGUCAGCAGGCGAAAAGUAAUGUGAAAA--AAA-AAUAAUAAUAAG (((........(((((((....((((.((.(..((..---------..))-----------..).)))))).)))).)))..((.....))..))).....--...-............ ( -15.10) >consensus ACAAAAAAUAAGCUAUA____GCUAUAUAGCUGUAUAGCCCCAAGUCGGCG______GACUGGGGCGAUGGAGUGUCAGCGGGCGAAAAGUAAUGGCGAAA__AAA_____AUAAUAAG ...........(((.......(((......((((...((((((.(((..........))))))))).))))......))).)))................................... (-13.23 = -14.58 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:41 2006