Locus 10251

Sequence ID 3R_DroMel_CAF1
Location 27,461,599 – 27,461,698
Length 99
Max. P 0.685593
window16339

overview

Window 9

Location 27,461,599 – 27,461,698
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.15
Mean single sequence MFE -26.67
Consensus MFE -20.70
Energy contribution -21.03
Covariance contribution 0.33
Combinations/Pair 1.04
Mean z-score -1.27
Structure conservation index 0.78
SVM decision value 0.32
SVM RNA-class probability 0.685593
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27461599 99 - 27905053
-----GCGCACAUGUGUGAGUGGGCAAAGUGAAAAAUUAUUUAUGUUGCAUACUUAUUGGAGCAUGC-AAAUGCGCAUUGUUAUGCAAAACG-UUUCUGAAUGCCG--------------
-----(((((((((((((((((.((((.(((((......))))).)))).)))))))....))))).-...))))).(((.....)))....-.............-------------- ( -24.40)
>DroPse_CAF1 22431 113 - 1
-----G--UGUGUGUGCGAGUGAGCAAAGUGAAAAAUUAUUUAUGUUGCCUACUUAUUGGGGCAUGGAAAAUGCGCAUUGUUAUGCAAAACCAUUUCUAUACUCCCCAGCCCAACCCUCC
-----.--....((.(((((((.((((.(((((......))))).)))).)))))..(((((.(((((((.((.((((....)))).....)))))))))...))))))).))....... ( -27.70)
>DroEre_CAF1 17377 97 - 1
-----G--CACAUGUGUGAGUGGGCAAAGUGAAAAAUUAUUUAUGUUGCAUACUUAUUGGAGCAUGC-AAAUGCGCAUUGUUAUGCAAAACG-GCGCUGAAUUCCG--------------
-----.--.......(((((((.((((.(((((......))))).)))).))))))).(((((((..-..))))((.(((((......))))-).)).....))).-------------- ( -23.40)
>DroYak_CAF1 18221 97 - 1
-----G--CACAUGUGUGAGUGGGCAAAGUGAAAAAUUAUUUAUGUUGCAUACUUAUUGGAGCAUGC-AAAUGCGCAUUGUUAUGCAAAACG-GCUCCGAAUUCCG--------------
-----.--........((((((.((((.(((((......))))).)))).))))))(((((((..((-....))((((....))))......-)))))))......-------------- ( -27.70)
>DroAna_CAF1 19229 103 - 1
UGUUUU--CAUUUGUGUGAGUGGGCAAAGUGAAAAAUUAUUUAUGUUGCCUACUUAUUGGGGCAUGC-AAAUGCGCAUUGUUAUGCAAACCGGUUUCUAAACUCCG--------------
.((((.--.......((((((((((((.(((((......))))).))))))))))))(((.((((..-..))))((((....))))...)))......))))....-------------- ( -29.10)
>DroPer_CAF1 20867 113 - 1
-----G--UAUGUGUGCGAGUGAGCAAAGUGAAAAAUUAUUUAUGUUGCCUACUUAUUGGGGCAUGGAAAAUGCGCAUUGUUAUGCAAAACCAUUUCUAUACUCCCCAGCCCAACCCUCG
-----.--....((.(((((((.((((.(((((......))))).)))).)))))..(((((.(((((((.((.((((....)))).....)))))))))...))))))).))....... ( -27.70)
>consensus
_____G__CACAUGUGUGAGUGGGCAAAGUGAAAAAUUAUUUAUGUUGCAUACUUAUUGGAGCAUGC_AAAUGCGCAUUGUUAUGCAAAACG_UUUCUAAACUCCG______________
...............(((((((.((((.(((((......))))).)))).))))))).(((((((.....))))((((....))))................)))............... (-20.70 = -21.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:40 2006