Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,214,461 – 3,214,552 |
Length | 91 |
Max. P | 0.691667 |
Location | 3,214,461 – 3,214,552 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.43 |
Mean single sequence MFE | -41.20 |
Consensus MFE | -31.73 |
Energy contribution | -31.85 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3214461 91 + 27905053 CGCCUUGGCGCGGCCUUCGUUCGAGUUCCUUUUGCUGGGGGCCGAGGA---GGUUGGG--------------------------GAAUCCCAAAACUGGUCAUUCGAUGGCCGGGCCAAA ....(((((.(((((.....((((((.(((......)))((((.((..---..(((((--------------------------....)))))..)))))))))))).))))).))))). ( -40.70) >DroSec_CAF1 39181 94 + 1 CGCCUUGGCGCGGCCUUCGUUCGAGUUCCUUUUGCUGGGGGCCGAGGAGUCGGUUGGG--------------------------GAGUCCCAAAACUGGUCAUUCGAUGGUCGGGCCAAA ....(((((.(((((.(((((((.((((((......))))))))))((.(((((((((--------------------------....))))..)))))))...))).))))).))))). ( -41.40) >DroSim_CAF1 40619 93 + 1 CGCCUUGGCGCGGCCUUCGUUCGAGUUCCUUUUGCUGG-GGCCGAAGAGUCGGUUGGG--------------------------GAGUCCCAAAACUGGUCAUUCGAUGGUCGGGCCAAA ....(((((.(((((.(((((((.(((((.......))-)))))))((.(((((((((--------------------------....))))..)))))))...))).))))).))))). ( -40.50) >DroEre_CAF1 33607 116 + 1 CGCCUUGGCUCGGCCUUCGUUCGAGUUCCUUUUUCUGG-GGCCAAGGA---GGUUGGGGAGGUUGGGGAGGUUGGGGAGGUCGGGAGUCCCAAAACUGGUCAUUCGAUGGUCGGGCCAAA ....(((((((((((.((((((((.(((((((((((..-((((.....---))))..)))))..)))))).)))))..(..(((...........)))..)...))).))))))))))). ( -45.50) >DroYak_CAF1 23992 91 + 1 CGCCUUGGCUUGGCCUUCGUUCGAGUUCCUUUUCCUGGGGGCCGAGGA---GGUUGGG--------------------------GAGUCCCAAAACUGGUCAUUCGAUGGUCGGGCCAAA ....(((((((((((.(((...((.(((((((((((.(....).))))---))..)))--------------------------)).))(((....))).....))).))))))))))). ( -37.90) >consensus CGCCUUGGCGCGGCCUUCGUUCGAGUUCCUUUUGCUGGGGGCCGAGGA___GGUUGGG__________________________GAGUCCCAAAACUGGUCAUUCGAUGGUCGGGCCAAA ....(((((.(((((.(((((((.((((((......))))))))))((.....(((((..............................)))))......))...))).))))).))))). (-31.73 = -31.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006