| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,455,876 – 27,455,978 |
| Length | 102 |
| Max. P | 0.688225 |
| Location | 27,455,876 – 27,455,978 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 96.73 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27455876 102 + 27905053 AGGAUAUUCUCCUAUAACUACUAUUCAAAUAACUUGGUUGCAUUUGCUAAAAUCGACUGAAAGUCGCUGGUCCUGAAAACGUUCGCAUGCCACUAAGUUGGC ((((.....))))................(((((((((.(((..(((......((((.....))))........(((....))))))))).))))))))).. ( -22.00) >DroSec_CAF1 11891 102 + 1 CGGAUAUUCUCCUAUAACUACUAUUCAAAUAACUUGGUUGCAUUUGCUUAAAGCGACUGAGAGUCGCUGGUCCUGAAAACAUUCGCAUGCCACUAAGUUGGC .(((.....))).................(((((((((.(((..(((....((((((.....))))))......(((....))))))))).))))))))).. ( -26.70) >DroSim_CAF1 11772 102 + 1 CGGAUAUUCUCCUAUAACUACUAUUCAAAUAACUUGGUUGCAUUUGCUAAAAGCGACUGAGAGUCGCUGGUCCUGAAAACAUUCGCAUGCCACUAAGUUGGC .(((.....))).................(((((((((.(((..(((....((((((.....))))))......(((....))))))))).))))))))).. ( -26.70) >consensus CGGAUAUUCUCCUAUAACUACUAUUCAAAUAACUUGGUUGCAUUUGCUAAAAGCGACUGAGAGUCGCUGGUCCUGAAAACAUUCGCAUGCCACUAAGUUGGC .(((.....))).................(((((((((.(((..(((....((((((.....))))))......(((....))))))))).))))))))).. (-24.50 = -24.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:34 2006