Locus 10244

Sequence ID 3R_DroMel_CAF1
Location 27,452,242 – 27,452,355
Length 113
Max. P 0.778829
window16327

overview

Window 7

Location 27,452,242 – 27,452,355
Length 113
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 90.98
Mean single sequence MFE -30.47
Consensus MFE -24.49
Energy contribution -24.55
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.57
Structure conservation index 0.80
SVM decision value 0.55
SVM RNA-class probability 0.778829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27452242 113 - 27905053
AAG---CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACCCAUGCACAAGCAUGUAA
...---...((((((((((.......)))))).(((((......((((.......))))......)))))((((((((((....)))))))))))))).(((((....)))))... ( -30.80)
>DroSim_CAF1 7968 113 - 1
AAG---CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACCCAUGCACAAGCAUGUAA
...---...((((((((((.......)))))).(((((......((((.......))))......)))))((((((((((....)))))))))))))).(((((....)))))... ( -30.80)
>DroEre_CAF1 8135 111 - 1
AAG---CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGGUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACCCAUGCAU--GUACCCAA
..(---(((((..((((((.......))))))....................((((((...(((.(.(((.(((((....))))).))).).))).))))))))))--))...... ( -29.60)
>DroYak_CAF1 8207 111 - 1
AAG---CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACCCAUGCAU--GUACAUAA
..(---(((((((((((((.......)))))).(((((......((((.......))))......)))))((((((((((....))))))))))))))..))))..--........ ( -29.30)
>DroAna_CAF1 8374 113 - 1
AAG---CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACACAUCCACGAGCGUGCGA
...---.((((((((((((.......)))))).(((((......((((.......))))......)))))((((((((((....)))))))))))))))).(((((....))).)) ( -33.20)
>DroPer_CAF1 9195 110 - 1
AAGCAGCGUGUACGCCGGAUAAACUU-UUGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUAUACAUGUGUAGGUG-----
..(((..((((((((((((......)-))))).(((((......((((.......))))......)))))((((((((((....)))))))))))))))).))).......----- ( -29.10)
>consensus
AAG___CGUGUACGCCGGAUAAACUUUUCGGCAUGAGUUCUUAUAGGCAAAAAUGGUUUUUCAAUACUCAAAGAUUUAUGAGUCUAUGAAUCUUGUACCCAUGCACAAGCAUGUAA
.......(.((((((((((.......)))))).(((((......((((.......))))......)))))((((((((((....)))))))))))))).)................ (-24.49 = -24.55 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:30 2006