Locus 10243

Sequence ID 3R_DroMel_CAF1
Location 27,451,255 – 27,451,361
Length 106
Max. P 0.743692
window16326

overview

Window 6

Location 27,451,255 – 27,451,361
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.69
Mean single sequence MFE -22.98
Consensus MFE -14.20
Energy contribution -15.53
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.62
SVM decision value 0.46
SVM RNA-class probability 0.743692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27451255 106 + 27905053
AAC--------------GCUUUCGUUUCCAUAUUGACUGCGAGCGGCACCUUAACGCCCGCAAAAAGCAAUCUCAUCGAAGGCAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
...--------------(((((((.......((((..((((.(((.........))).)))).....)))).....)))))))............((((((((.....)))))))).... ( -25.20)
>DroSec_CAF1 7208 106 + 1
GAC--------------GUUUGCGUUUCCACAUUGACUGCGAGGGGCACCUUAACGCCCGCAAAAAGCAAUCUCAUCGAAGGAAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
...--------------......((((((...((((.((.((.((((........))))((.....))..)).)))))).)))))).........((((((((.....)))))))).... ( -24.50)
>DroSim_CAF1 7013 93 + 1
---------------------------CCACAUUGACUGCGAGGGGCACCUUGACGCCCGCAAAAAGCAAUCUCAUCGAAGGCAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
---------------------------.............(((((((........))))((.....))...)))...((((....))))......((((((((.....)))))))).... ( -21.20)
>DroEre_CAF1 7121 106 + 1
GCU--------------GGUUUCGUUUCCAUAUGGACUUGGAGGGGCACCUUAACGCCCACCAAAAGCAAUCUCAUCGAAGGCAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
(((--------------(((((((..(((....)))..)))).((((........)))))))...))).........((((....))))......((((((((.....)))))))).... ( -26.10)
>DroYak_CAF1 7176 106 + 1
UGU--------------GUUUUCGUUUCCAUAUUGACUUCGAGGGGCACCUUAGCGCCCGCAAAAAGCAAUCUCAUCGAAGGCAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
..(--------------(((((((((........)))...(((((((........))))((.....))...)))...)))))))...........((((((((.....)))))))).... ( -24.20)
>DroAna_CAF1 7341 119 + 1
GGCAGCUUUCCAUAAAAAUGUUCAUUUCCAUAUUGAUUUCAU-GAUCUCGUCAUGCCCCGCAAAAAGCAAUCUCAUCGAAGGGAACUUUAUCCUAUGAAAUUAAAAUUUAAUUUCAAUUA
((..(((((........(((........))).(((....(((-(((...)))))).....)))))))).........((((....))))..))..((((((((.....)))))))).... ( -16.70)
>consensus
GAC______________GUUUUCGUUUCCAUAUUGACUGCGAGGGGCACCUUAACGCCCGCAAAAAGCAAUCUCAUCGAAGGCAACUUUAUCCCAUGAAAUUAAAAUUUAAUUUCAAUUA
........................................(((((((........))))((.....))...)))...((((....))))......((((((((.....)))))))).... (-14.20 = -15.53 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:29 2006