Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,430,569 – 27,430,679 |
Length | 110 |
Max. P | 0.959751 |
Location | 27,430,569 – 27,430,661 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -11.27 |
Energy contribution | -12.03 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.06 |
Mean z-score | -2.44 |
Structure conservation index | 0.55 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27430569 92 + 27905053 CAAAGUUUUUGGCUCGAAAGCUGCUGAGCCAAGCAC--GAAAGAAAUAUGGAGAUCGCGGCUUGAAGAGAGCUUAAAAGUAAAUCAGAA-AAAAG ...(.((((.(((((..(((((((.((.(((....(--....).....)))...))))))))).....))))).)))).).........-..... ( -24.20) >DroSec_CAF1 5529 81 + 1 CCAAGUUUUUGGCUCGAAAGCUGCUGAGC-AAGCAC--GAAAGAAA-----------CGGCUUGAAGAGAGCUUAAAAGCACAUCAGAAGAAAAG ....(((((((((((..((((((((....-.))).(--....)...-----------.))))).....)))).)))))))............... ( -21.30) >DroSim_CAF1 11915 81 + 1 CAAAGUUUUUGGCUCGAAAGCUGCUGAGC-AAGCAC--GAAAGAAA-----------CGGCUUGAAGAGAGCUUAAAAGUAAAUCAGAAGAAAAG ...(.((((.(((((..((((((((....-.))).(--....)...-----------.))))).....))))).)))).)............... ( -18.30) >DroEre_CAF1 5871 91 + 1 CAAAGUUUUCGGCU-CAAAGCUGCUGAGC-AAGCACGGAGAAGAAAUACUGAGAUCGCGGCUUAAA--GAGCUUUAAAGUAAAUUUAGAAAAAAG .....(((((((((-(.(((((((.((..-...(.(((..........))).).)))))))))...--))))).((((.....)))))))))... ( -18.00) >DroYak_CAF1 8484 90 + 1 CAGAGUUUUUGGCUACAAAGCUGCUGAGC-AAGCAC--AAAAGAAAUAGUGAGAUCGCGGCUUAAA--AAGCUUAAAAGCAAAAUCAGAGAAAAG ....((((((((((...(((((((.((..-...(((--..........)))...)))))))))...--.))).)))))))............... ( -20.20) >consensus CAAAGUUUUUGGCUCGAAAGCUGCUGAGC_AAGCAC__GAAAGAAAUA__GAGAUCGCGGCUUGAAGAGAGCUUAAAAGUAAAUCAGAAGAAAAG ....(((((((((((..(((((((................................))))))).....)))).)))))))............... (-11.27 = -12.03 + 0.76)
Location | 27,430,587 – 27,430,679 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -19.54 |
Consensus MFE | -13.51 |
Energy contribution | -13.40 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.13 |
Mean z-score | -1.77 |
Structure conservation index | 0.69 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27430587 92 + 27905053 AGCUGCUGAGCCAAGCAC--GAAAGAAAUAUGGAGAUCGCGGCUUGAAGAGAGCUUAAAAGUAAAUCAGAA-AAAAGCUUCCGUCGAGAAAAUAA .(((((.((.(((....(--....).....)))...)))))))((((.(..(((((...............-..)))))..).))))........ ( -20.23) >DroEre_CAF1 5888 90 + 1 AGCUGCUGAGC-AAGCACGGAGAAGAAAUACUGAGAUCGCGGCUUAAA--GAGCUUUAAAGUAAAUUUAGAAAAAAGCUUCUGCCGCA--AGGCA .((((((....-.)))......................(((((.....--(((((((................)))))))..))))).--.))). ( -21.29) >DroYak_CAF1 8502 88 + 1 AGCUGCUGAGC-AAGCAC--AAAAGAAAUAGUGAGAUCGCGGCUUAAA--AAGCUUAAAAGCAAAAUCAGAGAAAAGCUUCCGCCGCA--AGUAA .((((((....-.)))..--..................(((((.....--..(((....))).......(.(((....))))))))).--))).. ( -17.10) >consensus AGCUGCUGAGC_AAGCAC__AAAAGAAAUACUGAGAUCGCGGCUUAAA__GAGCUUAAAAGUAAAUUAAGA_AAAAGCUUCCGCCGCA__AGUAA ...((((......)))).....................(((((.......((((((..................))))))..)))))........ (-13.51 = -13.40 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:19 2006