Locus 10232

Sequence ID 3R_DroMel_CAF1
Location 27,423,265 – 27,423,384
Length 119
Max. P 0.568238
window16304

overview

Window 4

Location 27,423,265 – 27,423,384
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.66
Mean single sequence MFE -29.97
Consensus MFE -26.62
Energy contribution -26.40
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.85
Structure conservation index 0.89
SVM decision value 0.07
SVM RNA-class probability 0.568238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27423265 119 - 27905053
GCGGAAUGUGCAAACUCCUGUCUGUAAAUUUGAAUAAAAUGCGUUUGCC-CCGCCAAAGGGGCAUUCAGAUUUCAUGAAUAUUUACAACAAACUCGCCUGUUUUAUUUCACUCCGUCCGU
(((((.((((((.((....)).)))).....((((((((((((...(((-((......)))))(((((.......)))))..............)))..))))))))))).))))).... ( -30.80)
>DroSim_CAF1 936 119 - 1
GCGGAAUGUGCAAACUCCUGUCUGUAAAUUUGAAUAAAAUGCGUUUGCC-CCGCCACUGGGGCAUUCAGAUUUCAUGAAUAUUUACAACAAACUCGCCUGUUUUAUUUCACUUCGUCCGC
(((((...((((.((....)).)))).....((((((((((((...(((-(((....))))))(((((.......)))))..............)))..))))))))).......))))) ( -30.70)
>DroYak_CAF1 1032 120 - 1
GCGGAAUGUGCAAACUCCUGUCUGUAAAUUUGAAUAAAAUGCGUUUGCCCCCGCCACAGGGGCAUUCAGAUUUCAUGAAUAUUUACAACAAACUCGCCUGUUUUAUUUCACUUUGUCCGU
(((((...((((.((....)).)))).....((((((((((((...(((((.......)))))(((((.......)))))..............)))..))))))))).......))))) ( -28.40)
>consensus
GCGGAAUGUGCAAACUCCUGUCUGUAAAUUUGAAUAAAAUGCGUUUGCC_CCGCCACAGGGGCAUUCAGAUUUCAUGAAUAUUUACAACAAACUCGCCUGUUUUAUUUCACUUCGUCCGU
(((((...((((.((....)).)))).....((((((((((((...(((.((......)))))(((((.......)))))..............)))..))))))))).......))))) (-26.62 = -26.40 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:09 2006