Locus 10230

Sequence ID 3R_DroMel_CAF1
Location 27,419,576 – 27,419,676
Length 100
Max. P 0.798022
window16299

overview

Window 9

Location 27,419,576 – 27,419,676
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.00
Mean single sequence MFE -39.66
Consensus MFE -18.86
Energy contribution -19.92
Covariance contribution 1.06
Combinations/Pair 1.33
Mean z-score -2.06
Structure conservation index 0.48
SVM decision value 0.61
SVM RNA-class probability 0.798022
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27419576 100 - 27905053
GCUUCUCUGCCUGCUCCCAAAUGAGCUUCUCGGUUUCAUCGCCAACCUCUAUAGGAUUAAUGGGAGCCGGUCCCGUAUUGGUGGCAUUUCUGGCCACCAU
........(((.(((((((...(((...)))(((......)))..(((....))).....))))))).))).......(((((((.......))))))). ( -34.00)
>DroPse_CAF1 21085 100 - 1
GCUGCUCGGCCUCCUUCCAGAUGGCUUUCUCCGUCUCGUCGGCUGGCUUCAGGGGAUUAACGGGGGCCGAGCCCGUGUUGGUGGCAUUGCGUGCCACCAU
...(((((((((((((((....((((....(((......)))..))))....)))).....)))))))))))......(((((((((...))))))))). ( -48.80)
>DroGri_CAF1 20954 100 - 1
GCUGGAGGGCCUCGUCAAAGCAGCGCUGCUCCAUCUCAUUGGCGGGCUUGAUGGGAUUGACGGGCGCCGGGCCCGUAUUGGUGGCAUUGCGUGCCACCAU
(((.(.(.(((.((((((((((....))))...((((((..(.....)..))))))))))))))).)).)))......(((((((((...))))))))). ( -44.90)
>DroSec_CAF1 21660 100 - 1
GCUUCUCCGCCUGCUCCCAAAUGAGCUUCUCGGUUUCAUCACCAACCUCUAUGGGAUUAAUGGGAGCCGGUCCCGUAUUGGUGGCAUUUCUGGCCACCAU
........(((.(((((((...(((...)))(((......)))..((.....))......))))))).))).......(((((((.......))))))). ( -33.90)
>DroAna_CAF1 20818 100 - 1
UCUUAUCCGCCUCCUCCCAUACUUGCUUCUCGAUGUCGUCGCCAGGCUUGAGAGGAUUAAUAGGCGCCGGGCCGGUAUUCGUUGCAUUUCGGGCAACCAU
...((((.((((....((.......((((((((.(((.......))))))))))).......))....)))).))))...(((((.......)))))... ( -27.54)
>DroPer_CAF1 20502 100 - 1
GCUGCUCGGCCUCCUUCCAGAUGGCUUUCUCCGUCUCGUCGGCUGGCUUCAGGGGAUUAACGGGGGCCGAGCCCGUGUUGGUGGCAUUGCGUGCCACCAU
...(((((((((((((((....((((....(((......)))..))))....)))).....)))))))))))......(((((((((...))))))))). ( -48.80)
>consensus
GCUGCUCGGCCUCCUCCCAGAUGAGCUUCUCCGUCUCAUCGCCAGGCUUCAGGGGAUUAACGGGAGCCGGGCCCGUAUUGGUGGCAUUGCGGGCCACCAU
........((((((....(((((........)))))....)).))))............((((((.....))))))..(((((((.......))))))). (-18.86 = -19.92 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:05 2006