Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,211,760 – 3,211,852 |
Length | 92 |
Max. P | 0.516391 |
Location | 3,211,760 – 3,211,852 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -18.11 |
Energy contribution | -17.68 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.33 |
Mean z-score | -1.41 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3211760 92 - 27905053 UUAAGGUUUCGUUCUCCGAAUAAAAGUAUGCCAUGCACAUUUUCAUACCGAAUCAAAGGGCUGCGAAGCUCAGGCCCGUUUAGGCCGAACAA ....((((((((..(((........(((((.............))))).........)))..))))))))..((((......))))...... ( -21.95) >DroSec_CAF1 36458 82 - 1 UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC----------AAAGGGUUACGAAGCUCAGGCCCAUUUAGGCCGAACAA ....((((((((..(((...(.(((((.(((...))).))))).----------)..)))..))))))))..((((......))))...... ( -25.50) >DroSim_CAF1 37951 82 - 1 UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC----------AAAGGGCUGCGAAGCUCAGGCCCAUUUAGGCCGAACAA ....((((((((..(((...(.(((((.(((...))).))))).----------)..)))..))))))))..((((......))))...... ( -25.80) >DroEre_CAF1 30390 73 - 1 UUAAGGCUAAGUACUCCGAGUGAAAGUGUGCCAUGCA-------------------AGGACUGUGAGGCUCAGGCCCAUUUAGGCCGAACAA .....(((...(((.....)))..)))(.(((.((((-------------------.....)))).))).).((((......))))...... ( -16.20) >consensus UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC__________AAAGGGCUGCGAAGCUCAGGCCCAUUUAGGCCGAACAA ....((((((((..(((........................................)))..))))))))..((((......))))...... (-18.11 = -17.68 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:37 2006