Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,417,162 – 27,417,282 |
Length | 120 |
Max. P | 0.870893 |
Location | 27,417,162 – 27,417,282 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -44.28 |
Consensus MFE | -40.10 |
Energy contribution | -40.74 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.28 |
Mean z-score | -1.49 |
Structure conservation index | 0.91 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27417162 120 - 27905053 CUGUCGUUGCUUCUUCCUGUCGGUCCCGCCAGCUAGGAUGCGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUCGCCGCCAUCAG (((.((..(((((.(((((((((.((.((((((.((((...........)))).)))))).))))).))))))......))))))))))(((...(((((((.......))))))).))) ( -47.90) >DroSec_CAF1 19260 120 - 1 CUGUCGCUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCUUCGUUGGCAGGCUGAAUGGGAUUCACUGGGGCCGCAGCUGUGUUGGUGGCGUUUCUCGCGGCCAUCAG ((((.(((.(....(((((((((.((.((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((.(((.....))).)))).))) ( -49.80) >DroSim_CAF1 19083 120 - 1 CUGUCGUUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCGUUUCUCGCGGCCAUCAG ((((.(((.(....(((((((((.((.((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((.(((.....))).)))).))) ( -50.10) >DroEre_CAF1 19633 120 - 1 CUGUCGUUUCUUUUUUCUAUCUGCCCCGCCAGCUAGAAUGAGCUUCUCUUCGUCAUCGACAGGCUGUAUAGGAUUCACUGGAGCCGCUGCUGUGUUGGUGGCAUUUCUAGCCGCCAUUAG ((((((........(((((.(((......))).))))).(((...)))........))))))((.(((..((.(((....)))))..))).))..(((((((.......))))))).... ( -31.20) >DroYak_CAF1 19500 120 - 1 CUGUCGUUGUUUUUUUCUAUCGGCUCCGCCGGCUAGGAUGACCUUCUCCUCCUCAUUGGCAGGCUGUAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUUGCCGCCAUUAG ((((.(((.(....(((((((((((..(((((..((((.((.....)).))))..))))).))))).))))))......).))).))))(((...((((((((.....)))))))).))) ( -42.40) >consensus CUGUCGUUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUCGCCGCCAUCAG ((((.(((.(....(((((((((((..((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((((((.....)))))))).))) (-40.10 = -40.74 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:03 2006