Locus 10225

Sequence ID 3R_DroMel_CAF1
Location 27,408,890 – 27,408,982
Length 92
Max. P 0.540820
window16290

overview

Window 0

Location 27,408,890 – 27,408,982
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.48
Mean single sequence MFE -25.30
Consensus MFE -17.23
Energy contribution -16.65
Covariance contribution -0.58
Combinations/Pair 1.41
Mean z-score -1.56
Structure conservation index 0.68
SVM decision value 0.01
SVM RNA-class probability 0.540820
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27408890 92 + 27905053
CGCAUUGGCCGGAUAUCGGCCUGGAGUUCUGCACAAAGAUACUGGACAUUUUUGAGGAAAUCCAGUUUACUUACUCGUAGG-CAAAU-------CCUUUU
......(((((.....)))))((((.((((...(((((((.......))))))).)))).))))((((((......)))))-)....-------...... ( -25.10)
>DroSec_CAF1 11018 92 + 1
CCCAUUGGCCGGAUAUCGGCCUGGAGUUCUGCACAAAGAUACUGGAAAUUAUUGAGGAAAUUCAGUUUACUUACUCGUAGG-AAAAU-------CCUUGU
......(((((.....))))).(((.((((((...(((..((((((..((......))..))))))...)))....)))))-)...)-------)).... ( -22.80)
>DroSim_CAF1 10811 92 + 1
CCCAUUGGCCGGACAUCGGCCUGGAGUUCUGCACAAAGAUAUUGGAAAUUUUUGAGGAAAUCCAGUUUACUUACUCGUAGG-AAAAU-------CCUUCU
......(((((.....))))).(((.((((((.(((((((.......))))))).((....)).............)))))-)...)-------)).... ( -24.80)
>DroEre_CAF1 11314 93 + 1
CGCAUUGGCCGGAUAUCGGCCUGGAAUUCUGCACGAAGAUACUAGACAUUUUUGAGGAAAUCCAGUUCACUUACUCGUAAGUGAAAU-------CCCUUU
......(((((.....)))))((((.((((...(((((((.......))))))).)))).)))).((((((((....))))))))..-------...... ( -28.10)
>DroYak_CAF1 10584 93 + 1
CACAUUGGCCGGAUAUCGGACUGGAGUUCUGCACGAAGAUACUGGACAUUUUUGAGGAGAUCCAGUUCACUUACUCGUAAGUGAAAU-------CCUAUU
..........((((.((((((((((..(((.(.(((((((.......))))))).).)))))))))))(((((....))))))).))-------)).... ( -28.20)
>DroAna_CAF1 11358 100 + 1
CCCACUGGCCGGACAUUGGUUUGGAGUUUUCCACCAAGAUUCUGGAAAUUUUCGAGGAAAUCCGAUUCACAUACUCGUGAGUGCUACACCUACACCUACA
.....((((((((..(((((..((......)))))))..((((.((.....)).))))..))))((((((......)))))))))).............. ( -22.80)
>consensus
CCCAUUGGCCGGAUAUCGGCCUGGAGUUCUGCACAAAGAUACUGGAAAUUUUUGAGGAAAUCCAGUUCACUUACUCGUAAG_GAAAU_______CCUUUU
......(((((.....)))))((((.((((...(((((((.......))))))).)))).)))).(((.((((....)))).)))............... (-17.23 = -16.65 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:56 2006