Locus 10220

Sequence ID	3R_DroMel_CAF1
Location	27,404,604 – 27,404,724
Length	120
Max. P	0.912954

overview

Window 2

Location	27,404,604 – 27,404,724
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	77.69
Mean single sequence MFE	-40.82
Consensus MFE	-19.79
Energy contribution	-19.48
Covariance contribution	-0.30
Combinations/Pair	1.32
Mean z-score	-2.43
Structure conservation index	0.48
SVM decision value	1.09
SVM RNA-class probability	0.912954
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27404604 120 + 27905053
UGGGGCCUCCCAUUCCGCCCAUUGGGCUCAUGCCGCCCAUGCCAGCUAUUCCACCCAUGGGACUACCCAUUGGGACGGGUCCUCCAGGACCACCAGGUCCCCCUGGCCUUCCGUGAUUCA
((((....))))...(((....(((((.......))))).(((((.....((.((((((((....)))).))))...(((((....)))))....)).....))))).....)))..... ( -45.40)
>DroPse_CAF1 7311 108 + 1
UUGGUCCUCCCAUAUUGCCCAUUGGACUCAUUCCACCCAUUCCAGCCAUGGCGCCCAUGGGACUGCCCAUGGGCACGGGGCCACCGGGACC---A---------GGUCGUCCGUGAUUCA
.(((((((........((((..((((.....)))).........((....))(((((((((....)))))))))...))))....))))))---)---------((....))........ ( -43.10)
>DroWil_CAF1 6644 108 + 1
UUGGUCCGCCCAUAUUUCCCAUUGGACUCAUUCCACCCAUGCCAGCCAUCCCUCCCAUUGGACUACCCAUGGGAACAGGACCGCCAGGACC------------GGGCCGACCAUGAUUCA
.(((((.((((...........((((.....))))......((.((..(((.((((((.((....)).))))))...)))..))..))...------------)))).)))))....... ( -36.00)
>DroYak_CAF1 6295 111 + 1
UGGGGCCUCCCAUUCCGCCCAUUGGACUCAUGCCGCCCAUGCCAGCCAUUCCACCCAUGGGACUGCCCAUUGGGACGGGUCCACCC---------GGUCCUCCUGGCCUUCCGUGAUUCA
..((((..........))))....((.(((((........(((((.....((.((((((((....)))).))))..(((....)))---------)).....)))))....))))).)). ( -37.80)
>DroAna_CAF1 6606 117 + 1
UGGGUCCACCCAUUCCUCCCAUUGGGCUCAUUCCGCCCAUACCGGCCAUUCCGCCCAUCGGACUACCCAUUGGUACAGGGCCUCCCGGACCUCCCGGUCCC---GGUCUUCCGUGAUUCA
((((....)))).......((((((((.......))))).(((((((..((((.....)))).((((....))))...))))....(((((....))))).---))).....)))..... ( -37.90)
>DroPer_CAF1 6756 108 + 1
UUGGUCCUCCCAUAUUGCCCAUUGGACUCAUUCCGCCCAUUCCAGCCAUGGCGCCCAUGGGACUGCCCAUGGGCACGGGGCCACCGGGACC---A---------GGUCGUCCGUGAUUCA
.(((((((...............(((.....)))((((......((....))(((((((((....)))))))))...))))....))))))---)---------((....))........ ( -44.70)
>consensus
UGGGUCCUCCCAUACCGCCCAUUGGACUCAUUCCGCCCAUGCCAGCCAUUCCGCCCAUGGGACUACCCAUGGGCACGGGGCCACCAGGACC___A_________GGCCGUCCGUGAUUCA
.((((((..(((..........)))...........................(((.(((((....))))).)))...)))))).....................((....))........ (-19.79 = -19.48 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:49 2006