Locus 10214

Sequence ID 3R_DroMel_CAF1
Location 27,397,068 – 27,397,186
Length 118
Max. P 0.992909
window16264

overview

Window 4

Location 27,397,068 – 27,397,186
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 97.80
Mean single sequence MFE -28.64
Consensus MFE -27.52
Energy contribution -27.56
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.82
Structure conservation index 0.96
SVM decision value 2.36
SVM RNA-class probability 0.992909
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27397068 118 - 27905053
AUUGUGUUUACUUAAUUUAUGCGUGCAUAAGCACCACCAAUUAGCGAAAACAAGGAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCACUGCAAGUGCCGUUAAUUGCAUUUUGCAU
............(((((..((.((((....))))))..)))))((((((....((...))............((.(((((..((((((.......))))))..))))))))))))).. ( -28.30)
>DroSec_CAF1 13161 118 - 1
AUUGUGUUUACUUAAUUUAUGCGUGCAUAAGCACCACCAAUUAGCGAAAACAAGGAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCGCUGCAAGUGCCGUUAAUUGCAUUUUGCAU
............(((((..((.((((....))))))..)))))((((((....((...))............((.(((((..((((((.......))))))..))))))))))))).. ( -29.00)
>DroSim_CAF1 13211 118 - 1
AUUGUGUUUACUUAAUUUAUGCGUGCAUAAGCACCACCAAUUAGCGAAAACAAGGAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCGCUGCAAGUGCCGUUAAUUGCAUUUUGCAU
............(((((..((.((((....))))))..)))))((((((....((...))............((.(((((..((((((.......))))))..))))))))))))).. ( -29.00)
>DroEre_CAF1 13861 118 - 1
AUUGUGUUUACUUAAUUUAUGCGUGCAUAAGCACCACCAAUUAGCGAAAACAAGAAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCGCUGCAAGUGCCGUUAAUUGCACUUAGCAU
....(((((.(((((((..((.((((....))))))..)))))).).)))))...............((....(((((((..((((((.......))))))..))))).))....)). ( -28.30)
>DroYak_CAF1 13265 118 - 1
AUUGUGUUUAUUUAAUUUAUGCGUGCAUAGGCACCACCAAUUAGCGAAAACAAGAAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCGCUGCAAGUGCCGUUAAUUGCAUUUUGCAU
............(((((..((.((((....))))))..)))))((((((..........((......))...((.(((((..((((((.......))))))..))))))))))))).. ( -28.60)
>consensus
AUUGUGUUUACUUAAUUUAUGCGUGCAUAAGCACCACCAAUUAGCGAAAACAAGGAACCCAUUAUAUUGAAUUGUCAAUUUCCGGCGCGCUGCAAGUGCCGUUAAUUGCAUUUUGCAU
....(((((.(((((((..((.((((....))))))..)))))).).)))))................(((.((.(((((..((((((.......))))))..))))))).))).... (-27.52 = -27.56 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:34 2006