Locus 10210

Sequence ID 3R_DroMel_CAF1
Location 27,391,540 – 27,391,647
Length 107
Max. P 0.830849
window16256

overview

Window 6

Location 27,391,540 – 27,391,647
Length 107
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 84.85
Mean single sequence MFE -26.15
Consensus MFE -20.68
Energy contribution -20.23
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -2.53
Structure conservation index 0.79
SVM decision value 0.71
SVM RNA-class probability 0.830849
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27391540 107 + 27905053
AACUAUAU----UGCUGCUCUCAAACCGCAUUAACCCGCAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCAGGGCGGCAUUUCCAAAUUU
........----(((((((((((((..(((((.....((((((((........)))))))).....))))))))).(((((....))).)))))))))))........... ( -26.20)
>DroPse_CAF1 48029 104 + 1
AACUAUUUAUUCAGCUGCUAAC-------AUUUUCACACAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCUAGGCGGCGUUUCCCAGCUC
............(((((..(((-------(((((.(.((((((((........)))))))).).))))))))...((((.(((......))).))))........))))). ( -26.90)
>DroEre_CAF1 8309 101 + 1
AACUAUAU----UGCUGCUCUCAA------UUACCCCGCAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCAGGGCGGCAUUUCCAAAUUU
........----(((((((((...------......((((((((((((((((..((((((...))))))..)))).).))))))).)))).)))))))))........... ( -24.80)
>DroYak_CAF1 7670 101 + 1
AACUAUAU----UGCUGUCCUCAA------UUAACCCGCAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCAGGGCGGCAUUUCCAAAUUU
........----(((((((((...------......((((((((((((((((..((((((...))))))..)))).).))))))).)))).)))))))))........... ( -25.10)
>DroAna_CAF1 8314 100 + 1
ACCUAUUA----AGCUGCUGAC-------AUUUUCCCACAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCAAGGCGGCAUUUCUAAAUUU
........----.(((((((((-------(((((...((((((((........))))))))...))))))))((((((.((....))))))))))))))............ ( -27.00)
>DroPer_CAF1 46690 104 + 1
AACUAUUUAUUCAGCUGCUAAC-------AUUUUCACACAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCUAGGCGGCGUUUCCCAGCUC
............(((((..(((-------(((((.(.((((((((........)))))))).).))))))))...((((.(((......))).))))........))))). ( -26.90)
>consensus
AACUAUAU____AGCUGCUCAC_______AUUAUCCCACAAAGUUUGCCAAAUAAUUUUGUAUCAAAAUGUUUUGCGCCAGGCUUCUGUGCAAGGCGGCAUUUCCAAAUUU
.............((((((..................((((((((........))))))))...........((((((.((....))))))))))))))............ (-20.68 = -20.23 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:27 2006