Locus 1021

Sequence ID 3R_DroMel_CAF1
Location 3,210,718 – 3,210,837
Length 119
Max. P 0.614774
window1650

overview

Window 0

Location 3,210,718 – 3,210,837
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.26
Mean single sequence MFE -37.54
Consensus MFE -29.10
Energy contribution -29.66
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.17
SVM RNA-class probability 0.614774
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3210718 119 - 27905053
GGAAACGGAUGUGUUGAUUGUUAGCUUUUGGGUAGAGCAGACCAGCAGGACUGAGUCCCAGCUUUGUUGGCAGAACAGCACUGCUGUUAACUAGGGAACUGGAAAGCUGCACAGUAAAA
(....)..........(((((((((((((.(((....(((.((....)).)))..((((.(((.....)))..((((((...)))))).....))))))).)))))))).))))).... ( -37.10)
>DroSec_CAF1 30043 119 - 1
GGAAGCGGAUGUGUUGAUUGUUAGCUUUUGGGUGGAGCAGACCAGCAGGUCUCAGUCCCAGCUUUGUUGGCAGAACAGGACUCCUGUUAACUAGGGAACUGGAAAGCUGCACAGUAAGA
((((((.((((.......)))).))))))..(((.((((((((....)))))(((((((.(((.....)))..((((((...)))))).....))).))))....))).)))....... ( -38.90)
>DroSim_CAF1 36867 119 - 1
GGAAACGGAUGUGUUGAUUGUUAGCUUUUGGGUGGAGCAGACCAGCAGGACUCAGUCCCAGCUUUGUUGGCAGAACAGGACUGCUGUUAACUAGGGAACUGGAAAGCUGCACAGUAAGA
(....)..........(((((((((((((.(((..((..(((.(((((..((...(((((((...)))))..))..))..))))))))..)).....))).)))))))).))))).... ( -35.60)
>DroEre_CAF1 29256 117 - 1
GGAAACGGAUGUGUUGAUUGUUAGCUUUUGGGCGGAGUAGACCAUCAGGAUUGAGUCCCAGCUUUGUUGGCAGAACAACACUGCCAACA--CAGGGAACUCGAGAGCUGCACAGUAAGA
(....)...(((((((((.(((.(((((.....))))).))).))))((.(((((((((.....(((((((((.......)))))))))--..))).))))))...)))))))...... ( -38.90)
>DroYak_CAF1 18799 119 - 1
GGAAACGGAUGUGUUGAUUGUUAGCUUUGGGGUGGAGUAGACCAUCAGGACUGAGUCCCAGCCUUGUUGGCAGAACAACACUGCUGUUAACUAGGGAACUGGAAAGCUGCACAGUAAAA
(....)....((((((.((((((((...(((.(((..(((.((....)).)))....))).))).))))))))..))))))(((.(((..((((....))))..))).)))........ ( -37.20)
>consensus
GGAAACGGAUGUGUUGAUUGUUAGCUUUUGGGUGGAGCAGACCAGCAGGACUGAGUCCCAGCUUUGUUGGCAGAACAGCACUGCUGUUAACUAGGGAACUGGAAAGCUGCACAGUAAGA
(((..(((.(.(((((...(((.(((((.....))))).)))))))).).)))..)))(((((((..((((((.......))))))....((((....))))))))))).......... (-29.10 = -29.66 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:31 2006