Locus 10208

Sequence ID 3R_DroMel_CAF1
Location 27,379,105 – 27,379,203
Length 98
Max. P 0.506604
window16253

overview

Window 3

Location 27,379,105 – 27,379,203
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 88.15
Mean single sequence MFE -17.43
Consensus MFE -15.95
Energy contribution -16.40
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value -0.05
SVM RNA-class probability 0.506604
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27379105 98 - 27905053
ACCAUUCAGACUGGCCAUAGAGAAGUAAUUGGAAUCCAAGAUCAACAAUAUGAACACCAUACGUAUAUGGCACACAUUUUUGAAUUCUUUAUCCAAAG
...(((((((.((((((((.....(((.((((...))))(.(((......))).)....)))...)))))).))....)))))))............. ( -15.50)
>DroSec_CAF1 124505 91 - 1
ACCAUUCAGACUGGCCAUGGAAAAGUAACUGGAAUCCACGAUCAACACUAUGGAAACCAUACGAAUAUGGCACACAUUUUUGAAUUCUUUA-------
...(((((((.((((((((.....(((..(((..((((............))))..))))))...)))))).))....)))))))......------- ( -18.50)
>DroSim_CAF1 88719 91 - 1
ACCAUUCAGACUGGCCAUGGAAAAGUUAUUGGAAUCCACGAUGAACACUAUGGAAACCAUACGAAUAUGGCACACAUUUUUGAAUUCUUUA-------
...(((((((.((((((((.....((...(((..((((............))))..))).))...)))))).))....)))))))......------- ( -18.30)
>consensus
ACCAUUCAGACUGGCCAUGGAAAAGUAAUUGGAAUCCACGAUCAACACUAUGGAAACCAUACGAAUAUGGCACACAUUUUUGAAUUCUUUA_______
...(((((((.((((((((.....(((..(((..((((............))))..))))))...)))))).))....)))))))............. (-15.95 = -16.40 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:24 2006