Locus 10207

Sequence ID 3R_DroMel_CAF1
Location 27,377,864 – 27,377,970
Length 106
Max. P 0.521448
window16252

overview

Window 2

Location 27,377,864 – 27,377,970
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.76
Mean single sequence MFE -30.68
Consensus MFE -18.03
Energy contribution -19.60
Covariance contribution 1.57
Combinations/Pair 1.14
Mean z-score -2.68
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.521448
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27377864 106 - 27905053
CAGUUUCCCAAGGGGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGCCAGCAGUC
...((((((....))))))...(((......(((((....))))).(((....))).....(((.(((.((((((..(....)..)))))).))).)))))).... ( -34.60)
>DroSim_CAF1 87463 106 - 1
CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGCCAGCAGUC
...((((((...))))))....(((......(((((....))))).(((....))).....(((.(((.((((((..(....)..)))))).))).)))))).... ( -33.10)
>DroEre_CAF1 91026 106 - 1
CAGUUUCCCAGGGGCAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGCGAAUGGUGGCGGCAACAUCAUCAUCCAUUGCCAACAGUC
............(((((...(((((......(((((....))))).(((....))).....))))).(.((((((..(....)..)))))).).)))))....... ( -28.90)
>DroWil_CAF1 57336 88 - 1
CAUUUC-------GGGCAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCAACUACAGCAGCGGCUGU-----------
......-------......((((((......(((((....))))).(((....)))......(((((...((((....))))..)))))))))))----------- ( -23.50)
>DroYak_CAF1 81087 106 - 1
CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGCGAAUGGUGGCGGCAACAUCAUCAUCCACUGCCAACAGUC
...((((((...))))))....(((......(((((....))))).(((....))).....(((.(.(.((((((..(....)..)))))).).).)))))).... ( -30.70)
>DroAna_CAF1 94028 89 - 1
UAGUUU------GGGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUG---GCAACAUCAUCAUCCCCAGC--------
....((------(((((..((((((......(((((....))))).(((....))).....))))))((.(((((---....))))))).))))))).-------- ( -33.30)
>consensus
CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGCCA_CAGUC
...(((((....)))))..((((((......(((((....))))).(((....))).....))))))(.(((((((.(....).))))))).)............. (-18.03 = -19.60 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:23 2006