Locus 10206

Sequence ID 3R_DroMel_CAF1
Location 27,377,519 – 27,377,628
Length 109
Max. P 0.815350
window16251

overview

Window 1

Location 27,377,519 – 27,377,628
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 95.72
Mean single sequence MFE -32.56
Consensus MFE -27.45
Energy contribution -27.95
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.84
SVM decision value 0.66
SVM RNA-class probability 0.815350
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27377519 109 - 27905053
CGACCGCGGAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
(((..((((.((....(((.(((((..((.((......)).))...))))).))).....)))))).((((.((((.....)))).))))...............))). ( -32.10)
>DroSec_CAF1 122913 109 - 1
CGACCGCGGACCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
(((..((((.......(((.(((((..((.((......)).))...))))).))).......)))).((((.((((.....)))).))))...............))). ( -28.54)
>DroSim_CAF1 87115 109 - 1
CGACCGCGGAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
(((..((((.((....(((.(((((..((.((......)).))...))))).))).....)))))).((((.((((.....)))).))))...............))). ( -32.10)
>DroEre_CAF1 90667 109 - 1
CGACCGCGGAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
(((..((((.((....(((.(((((..((.((......)).))...))))).))).....)))))).((((.((((.....)))).))))...............))). ( -32.10)
>DroYak_CAF1 80729 109 - 1
CGACCGCGGAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUGGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
(((..((((.((((..(((.(((((..((.((......)).))...))))).)))...)))))))).((((.((((.....)))).))))...............))). ( -35.50)
>DroAna_CAF1 93701 103 - 1
CGACUGCGCAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCAAGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUUUCUGA------
.((((..(((((....(((.(((((..((.((......)).))...))))).)))..))))).))))((((.((((.....)))).)))).............------ ( -35.00)
>consensus
CGACCGCGGAGCUAAUUGUCGACGCUUUUUGCAUUUAAGCCAAUUUGCGUUCACAUUGUUGCCCGUCUGGCUGCUGGAAAACGGCUGCCAUCUAAAUAUCUAAACUCGA
.....((((.((....(((.(((((..((.((......)).))...))))).))).....)))))).((((.((((.....)))).))))................... (-27.45 = -27.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:22 2006