Locus 10203

Sequence ID 3R_DroMel_CAF1
Location 27,375,270 – 27,375,364
Length 94
Max. P 0.784915
window16245

overview

Window 5

Location 27,375,270 – 27,375,364
Length 94
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 75.69
Mean single sequence MFE -22.52
Consensus MFE -11.65
Energy contribution -12.55
Covariance contribution 0.90
Combinations/Pair 1.42
Mean z-score -1.88
Structure conservation index 0.52
SVM decision value 0.57
SVM RNA-class probability 0.784915
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27375270 94 + 27905053
AUAACCGUUUUUCGA-UUGC-------------ACCGGAAGGUGUCUGCU-UUUAUAGAACGGGAAAUAUUUAAAUUUUCCGUAAAACGAAGUGAGAACGAUGAAAGAG
.....(((((((...-..((-------------(((....)))))..(((-((......(((((((((......))))))))).....))))))))))))......... ( -26.20)
>DroSec_CAF1 120632 94 + 1
AUAACCGUCUUUCGA-UGGC-------------ACCGGAAGGUGUCUGCU-UUUAUAGAACGGGAAAUAUUUAAAUUUUCCGUAAAACGAAGUGAGAACGAUGAAAGAG
.......(((((((.-.(((-------------(((....)))))).(((-((......(((((((((......))))))))).....)))))........))))))). ( -30.40)
>DroSim_CAF1 84854 94 + 1
AUAACCGUCUUUCGA-UGGC-------------ACCGGAAGGUGUCUGCU-UUUAUAGAACGGGAAAUAUUUAAAUUUUCCGUAAAACGAAGUGAGAACGAUGAAAGAG
.......(((((((.-.(((-------------(((....)))))).(((-((......(((((((((......))))))))).....)))))........))))))). ( -30.40)
>DroEre_CAF1 88454 76 + 1
-------------------G-------------ACCGGAAGGGGACUGCC-UUUAUAGAACGGGGAAUAUUUAAAUUUUCAGUAAAACGAAGUGAGAACGAUGAAACAG
-------------------.-------------.((....))(..((..(-(((.....((.(..(((......)))..).)).....))))..))..).......... ( -11.00)
>DroYak_CAF1 78482 94 + 1
AUGACCGCUUUUCGA-UGCG-------------ACCGGAAGGUGUCUGCU-UUUAUAGAACGGGAAACAUUUAAAUUUUCAGUAAAACGAAGUGAGAACGAUGAAACAA
..((((((.......-.)))-------------(((....))))))((.(-(((((......(....).......((((((.(.......).))))))..)))))))). ( -17.50)
>DroAna_CAF1 91309 108 + 1
AUAACAAUUUUUUGUGUGGCAUAGUGGCCAACAAGCGGAAGUUAACAGGUAUUUUUACAGCGGAAAAUAUUUUAAUAUUCCUCAGAAUGAAGUGAGAA-GAUUAACUGA
.((((..(..(((((.((((......)))))))))..)..)))).(((...(((((((...((((.((......)).))))((.....)).)))))))-......))). ( -19.60)
>consensus
AUAACCGUUUUUCGA_UGGC_____________ACCGGAAGGUGUCUGCU_UUUAUAGAACGGGAAAUAUUUAAAUUUUCCGUAAAACGAAGUGAGAACGAUGAAAGAG
.....((((.(((....................(((....)))................(((((((((......)))))))))............))).))))...... (-11.65 = -12.55 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:17 2006