Locus 10202

Sequence ID 3R_DroMel_CAF1
Location 27,371,344 – 27,371,437
Length 93
Max. P 0.991724
window16244

overview

Window 4

Location 27,371,344 – 27,371,437
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 96.14
Mean single sequence MFE -23.42
Consensus MFE -21.26
Energy contribution -21.62
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.91
SVM decision value 2.28
SVM RNA-class probability 0.991724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27371344 93 + 27905053
UUGGCUUUGGCCAGCGAUUAGCUCUUCUACUGUUUUGGCACCUU-UUUUUGGGGCUAAUGCCGCUUGAUCUUAGAUUGGCUUCAUGAUAAUUUA
(((((....))))).((..((((..((((..(((..(((.((..-.....))(((....)))))).)))..))))..))))))........... ( -24.90)
>DroSec_CAF1 116837 94 + 1
UUGGCUUUGGCCAGCGAUUAGCUCUUCUACUGUUUUGGCAACUUUUUUUUGGGGCUAAUGCCGCUUGAUCUUAGAUUGGCUUCAUGAUAAUUUA
(((((....))))).((..((((..((((..(((..(((..((.......))(((....)))))).)))..))))..))))))........... ( -22.50)
>DroSim_CAF1 81045 93 + 1
UUGGCUUUGGCCAGCGAUUAGCUCUUCUACUGUUUUGGCACCUU-UUUUUGGGGCUAAUGCCGCUUGAUCUUAGAUUGGCUUCAUGAUAAUUUA
(((((....))))).((..((((..((((..(((..(((.((..-.....))(((....)))))).)))..))))..))))))........... ( -24.90)
>DroEre_CAF1 84635 92 + 1
UUGGCUUUGGCCAGCGAUUAGCUCUUCUACUAUUUUGGCACCUU--UUUUGGGGCUAAUGCCGCUUGAUCUUAGAUCGGCUUCAUGAUAAUUUA
(((((....))))).((..((((..((((..(((..(((.((..--....))(((....)))))).)))..))))..))))))........... ( -24.80)
>DroYak_CAF1 74605 92 + 1
UUGGCUUUGGCCAGCGAUUAACUCUUCUACUAUUUCGGCACCUU--UUUUGAGGCUAAUGCCGCUUGAUCUUAGAUUGGCUUCAUGAUAAUUUA
(((((....))))).((....((..((((..(((.(((((((((--....))))....)))))...)))..))))..))..))........... ( -20.00)
>consensus
UUGGCUUUGGCCAGCGAUUAGCUCUUCUACUGUUUUGGCACCUU_UUUUUGGGGCUAAUGCCGCUUGAUCUUAGAUUGGCUUCAUGAUAAUUUA
(((((....))))).((..((((..((((..(((..(((.((........))(((....)))))).)))..))))..))))))........... (-21.26 = -21.62 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:16 2006