| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,370,336 – 27,370,443 |
| Length | 107 |
| Max. P | 0.863359 |
| Location | 27,370,336 – 27,370,443 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -21.04 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27370336 107 - 27905053 -----UUUUCUUGCCUG---CAUGGUCU----UUUCCCUGCCAUUUGG-CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAACGGCGACUGGCAGGCUGCGUAAAUGAAUAGCUGCCAGGC -----.......(((((---((.((...----...)).))).....((-((((.(((...(((((.((((((((........)))))......)))))))).....))).)))))))))) ( -35.30) >DroGri_CAF1 55766 83 - 1 -----------UGC--------------------------CCAUUUGGGGGGCAAUUAAUGCGCACGCUUCUUUUAAUCAACAGAAACUGGCAGGCUGCGUAAUUUAAUAGCUGCCAGAC -----------..(--------------------------((....))).(((((((((((((((.((((((.....((....))....)).))))))))))..)))))...)))).... ( -22.20) >DroEre_CAF1 83606 114 - 1 -----UUUUCUUGUCUUUUGCCAUUUCUUACCAUUUCUUGCCAUUUGG-CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAACGGCGACUGGCAGGCUGCGUAAAUGAAUAGCUGCCAGGC -----..................................(((...(((-((((.(((...(((((.((((((((........)))))......)))))))).....))).)))))))))) ( -29.40) >DroWil_CAF1 48700 93 - 1 UAGAUAUUUUUUGC--------------------------CCAUUUGG-CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAAAGGCGACUGGCAGGUUGCGUAAAUUAAUAGCUGCCAGGC ............((--------------------------(....(((-((((.(((((.(((((.(((((((((......))))))..)))....)))))...))))).)))))))))) ( -31.40) >DroYak_CAF1 73571 98 - 1 -----UUUUCUUGCUUC----------------UUUCUUGCCAUUUGG-CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAACAGCGACUGGCAGGCUGCGUAAAUGAAUAGCUGCCAGGC -----............----------------......(((...(((-((((.(((...(((((.((((.(((...((......))..)))))))))))).....))).)))))))))) ( -29.30) >DroAna_CAF1 85676 88 - 1 -----GUUUUUUGC--------------------------CCAUUUGG-CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAACGGCGACUGGCAGGCUGCGUAAAUGAAUAGCUGCCAGGC -----.......((--------------------------(....(((-((((.(((...(((((.((((((((........)))))......)))))))).....))).)))))))))) ( -29.00) >consensus _____UUUUCUUGC__________________________CCAUUUGG_CGGCAAUUAAAGCGCACGCUUCGUCUAAUCAACGGCGACUGGCAGGCUGCGUAAAUGAAUAGCUGCCAGGC ...........................................(((((.((((.(((...(((((.((((((((........)))))......)))))))).....))).))))))))). (-21.04 = -20.77 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:15 2006