Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 628,827 – 628,929 |
Length | 102 |
Max. P | 0.711276 |
Location | 628,827 – 628,929 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.12 |
Mean single sequence MFE | -21.38 |
Consensus MFE | -12.51 |
Energy contribution | -13.45 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.17 |
Mean z-score | -2.04 |
Structure conservation index | 0.59 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 628827 102 + 27905053 CGCACAAAUUCAUUGUUUUUAAG-----AAUAUU------CAACGGGAAAAUUUCACGUUGCCACC---AAAGGGCAAUGGAAACUAGGCACCAAAAGUGAACAAUGAACAAUUUA ........(((((((((......-----......------((((((((....))).))))).(((.---...((((...(....)...)).))....))))))))))))....... ( -22.60) >DroSec_CAF1 44630 99 + 1 CACACAAAUUCUUUGUUUUUAAAACUUUAAUAUU------UAACGGGAAAAUUCCAUGUUGCCACCACCAAAGGGCAAUGGAAACUAGGCAC----AA-------UGAAGAAUUUA .....((((((((..((.................------.(((((((....))).))))(((.((......)).....(....)..)))..----))-------..)))))))). ( -19.90) >DroSim_CAF1 46241 106 + 1 CACACAAAUUCUUUGUUUUUAAGACUUUAAUAUU------UAACGGGAAAAUUCCAUGUUGCCACCACAAAAGGGCAAUGGAAACUAGGCAC----AAUGAACAAUGAAGAAUUUA .....((((((((..((((((.............------.....(((....))).(((.(((.((......)).....(....)..)))))----).)))).))..)))))))). ( -20.90) >DroEre_CAF1 47828 116 + 1 CGCACAAAUUCUUAGUUUUAUAGGCUUUAAUAUUAAACUACAACGGGAAAAUUCCAUGUAGCCACCACAGAAGAGCAAUAGAAACUAGGCACCAAAAGUGAACAAUGGAGAAUUUA .....((((((((((((((....(((((.........(((((...(((....))).)))))..........)))))....)))))))....(((...(....)..)))))))))). ( -22.11) >consensus CACACAAAUUCUUUGUUUUUAAGACUUUAAUAUU______CAACGGGAAAAUUCCAUGUUGCCACCACAAAAGGGCAAUGGAAACUAGGCAC____AAUGAACAAUGAAGAAUUUA .....((((((((((((.......................((((((((....))).))))).............((...(....)...)).............)))))))))))). (-12.51 = -13.45 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:13 2006