| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,363,879 – 27,363,976 |
| Length | 97 |
| Max. P | 0.527644 |
| Location | 27,363,879 – 27,363,976 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.91 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -16.05 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27363879 97 - 27905053 --CC------GGCUAACUGACUUGGUU----------UGACUCUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCG-----UACAGGAAUGUUA --((------((((((.(((.(..(..----------.......)..).))).))).))).(((((((((........)))))))))((((.((....)).)-----))).))....... ( -22.30) >DroGri_CAF1 48147 92 - 1 --CU------GGCAAAGUGCCCG---C----------UGACUUUUUGAUACAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCC-----CAGUGGAAUGC-- --..------(((.....)))((---(----------((......................(((((((((........)))))))))..(((......))).-----)))))......-- ( -21.80) >DroEre_CAF1 73885 96 - 1 --CC------GGCUAACUGCCUUGGC-----------UAACUCUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCG-----UACAGGAAUGUUA --..------(((.....))).....-----------..........((((...((((((.(((((((((........)))))))))...........))))-----))...)))).... ( -23.40) >DroWil_CAF1 39096 110 - 1 ----------GGCUAACUGGCAUUGUUGUGAGCCUUCUGGCUUUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCCAAGCCAAGUGGAAUGUUG ----------((((...((((.(((((..(((((....)))))..............((..(((((((((........)))))))))..))...)))))))))))))............. ( -33.10) >DroYak_CAF1 66755 99 - 1 AACU------GGCUUACUGCCUUGGUU----------UGACUCUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCG-----UACAGGAAUGUUA ((((------(((.....)))..))))----------..........((((...((((((.(((((((((........)))))))))...........))))-----))...)))).... ( -23.40) >DroAna_CAF1 78479 103 - 1 --CCAGCUCUGGCUAACUGCCUUCGUU----------UGACUUUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCA-----UACUGGAAUGUUA --((((....(((.....)))..(((.----------(((.........)))...)))...(((((((((........)))))))))(((((......))))-----).))))....... ( -23.80) >consensus __CC______GGCUAACUGCCUUGGUU__________UGACUCUUUGAUUCAUUUACGCUAAUUAGGUGACACAAUUCUCACCUAAUGUGCUCUGAUAAGCG_____UACAGGAAUGUUA ..........(((.....))).............................(((((......(((((((((........)))))))))..(((......)))...........)))))... (-16.05 = -16.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:14 2006