| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,358,177 – 27,358,269 |
| Length | 92 |
| Max. P | 0.709346 |
| Location | 27,358,177 – 27,358,269 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -35.88 |
| Consensus MFE | -22.70 |
| Energy contribution | -24.34 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27358177 92 - 27905053 GAGU--GUUGGUCUGGGA--------GUAGGUCUUG------CUUUUGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ....--((((((((((((--------((((.(((..------(((((......)))).)..)))))))))..))))))))))....((..(((....)))..)).... ( -36.90) >DroSec_CAF1 103632 92 - 1 GAGC--GUUGGUCUGGGA--------GUAGGUCUGG------CUUUUGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ....--((((((((((((--------((((.(((.(------(((((......)))).)).)))))))))..))))))))))....((..(((....)))..)).... ( -36.20) >DroSim_CAF1 67823 92 - 1 GAGU--GUUGGUCUGGGA--------GUAGGUCUGG------CUUUUGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ....--((((((((((((--------((((.(((.(------(((((......)))).)).)))))))))..))))))))))....((..(((....)))..)).... ( -35.90) >DroEre_CAF1 68083 92 - 1 GAGU--GUUGGUCUGGGA--------GUAAGUCUGG------CUUUCGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ....--((((((((((((--------(((.((((.(------((((((....))))).)).)))))))))..))))))))))....((..(((....)))..)).... ( -37.50) >DroYak_CAF1 60994 100 - 1 GAGU--GUUGGUCUGGGCUUAAGUCUGUAAGUCUGG------CUUUUGGGCUUGAGGUGUGAGACUACUUAGCCAGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ....--((((((((((.((((((((((.(((.....------))).))))))))))...((((....)))).))))))))))....((..(((....)))..)).... ( -39.00) >DroAna_CAF1 72174 97 - 1 AAAAUCCACCGUCUGAGG--------CGAUGUCUGAGCUGGUCUUGUGG---AGAGGUGUGAGGCUAUUUAGCCAGGCCAGCUAACCCGGACCAAGCAGAAGCGAUUA .........((.((...(--------(...((((((((((((((.((.(---((.(((.....))).))).)).)))))))))....)))))...))...)))).... ( -29.80) >consensus GAGU__GUUGGUCUGGGA________GUAGGUCUGG______CUUUUGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUA ......((((((((((...........(((((((.............)))))))(((((......)))))..))))))))))....((..(((....)))..)).... (-22.70 = -24.34 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:10 2006