Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,356,838 – 27,356,967 |
Length | 129 |
Max. P | 0.912399 |
Location | 27,356,838 – 27,356,930 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -17.35 |
Energy contribution | -18.35 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.18 |
Mean z-score | -1.55 |
Structure conservation index | 0.73 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27356838 92 - 27905053 AUGUUCCUCUACCACAGUGGUUUCACUUCUGGCACCCCAUCGCGAAGUCGUAAGACUCCUGGCAAAAAAUGAUUGCGAUUCUUUUACUAUGU ...........(((.((((....))))..)))......(((((((((((....)))).....((.....)).)))))))............. ( -16.10) >DroSec_CAF1 102288 92 - 1 AUGUUUCUCUACCACAGUGGUUUUUCCUCUGGCACCCCAUCGGGAAGUCGUAAGACUUCUGGCGAAAAAUGAUUGCGGUUCUUUUACUAUGU ..((......(((.((((.(((((((...(((....))).(.(((((((....))))))).).))))))).)))).)))......))..... ( -27.90) >DroSim_CAF1 66485 92 - 1 AUGUUUCUCUACCACAGUGGUUUUUCCUCUGGCACCCCAUCGGGAAGUCGUAAGACUUCUGGCGAAAAAUGAUUGCGGUUCUUUUACUAUGU ..((......(((.((((.(((((((...(((....))).(.(((((((....))))))).).))))))).)))).)))......))..... ( -27.90) >DroEre_CAF1 66715 92 - 1 AUGUUUCUCUAUCACAAUGGGUUUUUUACUGGCCCCCCGUCGGGAAGUCGUAAGACGCCUGGCGAAAAAUGAUUGCUAUACUUUUACCAUGU ..((......((((....(((((.......)))))..(((((((..(((....))).))))))).....))))......))........... ( -23.40) >consensus AUGUUUCUCUACCACAGUGGUUUUUCCUCUGGCACCCCAUCGGGAAGUCGUAAGACUCCUGGCGAAAAAUGAUUGCGAUUCUUUUACUAUGU ..((......(((.((((.(((((((...(((....)))((((((.(((....))))))))).))))))).)))).)))......))..... (-17.35 = -18.35 + 1.00)
Location | 27,356,863 – 27,356,967 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -17.28 |
Energy contribution | -18.24 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.28 |
Mean z-score | -2.54 |
Structure conservation index | 0.54 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27356863 104 - 27905053 UUAGUGCCGUCCAGUGGAAAAAUAGGAAACGAUUUCCAUGUUCCUCUACCACAGUGGUUUCACUUCUGGCACCCCAUCGCGAAGUCGUAAGACUCCUGGCAAAA ...(((((.....(((((..((((((((.....)))).))))..)))))...((((....))))...)))))......((.(((((....))))..).)).... ( -28.30) >DroSec_CAF1 102313 104 - 1 UUAGUGCCGUCCAGUGGAAAAAUAGGAAACGAUUUUCAUGUUUCUCUACCACAGUGGUUUUUCCUCUGGCACCCCAUCGGGAAGUCGUAAGACUUCUGGCGAAA ....((((((((((.((((((((((((((((.......)))))).)))((.....))))))))).)))).)).......(((((((....)))))))))))... ( -37.20) >DroSim_CAF1 66510 104 - 1 UUAGUGCCGUCCAGUGGAAAAAUAGGAAACGAUUUUCAUGUUUCUCUACCACAGUGGUUUUUCCUCUGGCACCCCAUCGGGAAGUCGUAAGACUUCUGGCGAAA ....((((((((((.((((((((((((((((.......)))))).)))((.....))))))))).)))).)).......(((((((....)))))))))))... ( -37.20) >DroEre_CAF1 66740 103 - 1 UU-GGCCAGUGCAGAGGAAAAAUAAGAAAUGAUUUCCAUGUUUCUCUAUCACAAUGGGUUUUUUACUGGCCCCCCGUCGGGAAGUCGUAAGACGCCUGGCGAAA ..-((((((((.((((((((....(....)..))))).......(((((....))))).))).))))))))...(((((((..(((....))).)))))))... ( -34.50) >DroYak_CAF1 59676 91 - 1 UU-GUCCAGUGCAGUGGUAAAAUGGGAAAUGAUUUCCAUGUUUCUCUAUCUUAGUGGUUUUACUACUGCCACCCUAUCGUGAAGUCGUACGA------------ ..-.....((((((((((((((((((((....)))))))......((((....)))).)))))))))).)))....(((((......)))))------------ ( -23.50) >consensus UUAGUGCCGUCCAGUGGAAAAAUAGGAAACGAUUUCCAUGUUUCUCUACCACAGUGGUUUUUCUUCUGGCACCCCAUCGGGAAGUCGUAAGACUCCUGGCGAAA ........(.((((.(((((((..(((((((.......)))))))((((....))))))))))).)))))......((((((.(((....)))))))))..... (-17.28 = -18.24 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:07 2006