Locus 10190

Sequence ID 3R_DroMel_CAF1
Location 27,337,075 – 27,337,171
Length 96
Max. P 0.731407
window16225

overview

Window 5

Location 27,337,075 – 27,337,171
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -25.40
Consensus MFE -15.61
Energy contribution -15.95
Covariance contribution 0.34
Combinations/Pair 1.15
Mean z-score -1.97
Structure conservation index 0.61
SVM decision value 0.43
SVM RNA-class probability 0.731407
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27337075 96 + 27905053
CAAAACUGGCCCCAGUUUACCUCGGCUGCUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCAAGCCAAGUGACCCAAAUCCGCUG-------A
..((((((....)))))).....((..(((((((....(((.(((((.(((....))).)))))..)))...)))).)))..))...........-------. ( -26.70)
>DroPse_CAF1 32430 86 + 1
CAGCUCUGGCUCU----------GGUCGUUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCCAGCCAAGUGACCCAAAUCUUCUG-------G
.(((....)))..----------(((((((((((....(((.(((((.(((....))).)))))..)))...)))))).)))))...........-------. ( -26.00)
>DroEre_CAF1 47110 84 + 1
CAAAACUGGCC------------UGCUGCUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCAAGCCAAGUGACCCAAAUCCACUG-------A
......(((..------------((((..(((((....(((.(((((.(((....))).)))))..)))...)))))))))..))).........-------. ( -20.40)
>DroYak_CAF1 39453 96 + 1
CAAAACUGGCCCCAGUUUACCCCGGCUGCUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCAAGCCAAGUGACCCAAAUCCGCUG-------A
..((((((....)))))).....((..(((((((....(((.(((((.(((....))).)))))..)))...)))).)))..))...........-------. ( -26.70)
>DroAna_CAF1 48189 101 + 1
CA--ACUGAGCCCAGUUUAGCUCCACUCCCGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCAAGCCAAGUGACCCAAAUCUGCUGGCGGCUAA
.(--((((....)))))(((((.((((...((((....(((.(((((.(((....))).)))))..)))...)))).))))..(((.......))).))))). ( -26.60)
>DroPer_CAF1 32564 86 + 1
CAGCUCUGGCUCU----------GGUCGUUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCCAGCCAAGUGACCCAAAUCUUCUG-------G
.(((....)))..----------(((((((((((....(((.(((((.(((....))).)))))..)))...)))))).)))))...........-------. ( -26.00)
>consensus
CAAAACUGGCCCC__________GGCUGCUGGCUAAUUGUCUGCAAUUGUUUCAUAACCGUUGCCUGACCCAAGCCAAGUGACCCAAAUCCGCUG_______A
.......((((............))))..(((((....(((.(((((.(((....))).)))))..)))...))))).......................... (-15.61 = -15.95 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:51:00 2006